LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011943
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024234
Biotype: transcript isomorph
Gene id: XLOC_011943
Gene Name: XLOC_011943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
880-898
0.030
1
RP11-96C23.5
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
678-704
0.022
1
7mer
1041-1063
0.004
0
7mer
2040-2065
0.004
Not Conserved
WDR86-AS1
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000480632
Biotype: antisense
Gene id: ENSG00000243836
Gene Name: WDR86-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
673-695
0.018
1
6mer
690-700
0.007
0
6mer
628-652
0.006
1
RP11-588H23.3
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548924
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-556
0.030
1
RP11-521O16.1
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567613
Biotype: lincRNA
Gene id: ENSG00000260634
Gene Name: RP11-521O16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-416
0.017
1
6mer
123-142
0.008
1
6mer
357-376
0.006
1
XLOC_008046
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3234-3258
0.016
6
6mer
3954-3966
0.008
8
6mer
365-385
0.003
3
6mer
2823-2840
0.003
2
6mer
3206-3230
0.001
Not Conserved
XLOC_001564
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003762
Biotype: transcript isomorph
Gene id: XLOC_001564
Gene Name: XLOC_001564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-928
0.030
0
LINC00890
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3234-3258
0.016
6
6mer
3954-3966
0.008
8
6mer
365-385
0.003
3
6mer
2823-2840
0.003
2
6mer
3206-3230
0.001
Not Conserved
AL022344.5
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439913
Biotype: lincRNA
Gene id: ENSG00000234864
Gene Name: AL022344.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3732-3747
0.022
0
6mer
29-43
0.006
1
6mer
1680-1700
0.003
3
RP11-21I10.2
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514608
Biotype: lincRNA
Gene id: ENSG00000249356
Gene Name: RP11-21I10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-173
0.026
0
6mer
317-328
0.005
0
STARD13-AS
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609063
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
AC012361.1
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447260
Biotype: lincRNA
Gene id: ENSG00000236436
Gene Name: AC012361.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1346-1369
0.021
3
7mer
863-868
0.009
0
STARD13-AS
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607935
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
XLOC_000042
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000832
Biotype: transcript isomorph
Gene id: XLOC_000042
Gene Name: XLOC_000042
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3645-3665
0.012
1
8mer
283-307
0.011
0
7mer
3020-3042
0.008
1
LOC100128573
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_024491.1
Biotype: lincRNA
Gene id: NR_024491.1 (gene)
Gene Name: LOC100128573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-146
0.023
0
6mer
415-441
0.007
0
RP11-416O18.2
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462382
Biotype: lincRNA
Gene id: ENSG00000240478
Gene Name: RP11-416O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-191
0.030
5
STARD13-AS
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609343
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
LAMTOR5-AS1
hsa-miR-20a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608499
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-786
0.020
1
7mer
690-712
0.010
1
RP11-222K16.1
hsa-miR-20a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607601
Biotype: lincRNA
Gene id: ENSG00000271943
Gene Name: RP11-222K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-227
0.017
1
7mer
21-36
0.013
1
STARD13-AS
hsa-miR-20a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608803
Biotype: retained_intron
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
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