LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-421N8.2
hsa-miR-20a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581844
Biotype: lincRNA
Gene id: ENSG00000264699
Gene Name: RP11-421N8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-368
0.031
1
XLOC_003380
hsa-miR-20a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006740
Biotype: transcript isomorph
Gene id: XLOC_003380
Gene Name: XLOC_003380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2077-2093
0.029
1
6mer
1526-1548
0.002
1
STARD13-AS
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608197
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
STARD13-AS
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609588
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
AC009158.1
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000596241
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-300
0.031
4
AC005154.6
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7995-8016
0.004
1
7mer
12247-12274
0.004
1
8mer
11878-11902
0.003
1
6mer
3903-3927
0.003
2
6mer
715-734
0.003
1
8mer
12161-12185
0.002
1
6mer
13808-13828
0.002
0
6mer
9079-9098
0.002
1
7mer
3843-3856
0.002
0
6mer
9858-9872
0.002
1
6mer
13053-13072
0.002
0
6mer
9767-9794
0.001
1
6mer
9707-9725
0.001
1
6mer
7958-7976
0.001
1
HCG18
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-110
0.020
1
6mer
188-211
0.006
1
6mer
1039-1062
0.003
2
6mer
1304-1308
0.002
0
STARD13-AS
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609997
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
STARD13-AS
hsa-miR-20a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609608
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
RP11-363L24.3
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523365
Biotype: antisense
Gene id: ENSG00000253961
Gene Name: RP11-363L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-386
0.018
1
6mer
8-23
0.009
1
6mer
504-517
0.003
1
RP11-510D19.1
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566582
Biotype: lincRNA
Gene id: ENSG00000260676
Gene Name: RP11-510D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-481
0.028
0
6mer
1380-1392
0.003
1
GRM5-AS1
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-324
0.017
2
6mer
148-168
0.008
7
6mer
2391-2410
0.002
5
6mer
2058-2075
0.002
1
6mer
1154-1176
0.001
2
STARD13-AS
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610218
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
RP11-336K24.12
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610146
Biotype: antisense
Gene id: ENSG00000273002
Gene Name: RP11-336K24.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1677-1694
0.023
3
7mer
2003-2027
0.007
1
XXbac-B476C20.13
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441167
Biotype: sense_intronic
Gene id: ENSG00000234913
Gene Name: XXbac-B476C20.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
926-950
0.013
1
8mer
252-276
0.009
1
8mer+mismatch
369-390
0.008
1
STARD13-AS
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609335
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
RP11-216M21.7
hsa-miR-20a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2282-2302
0.011
0
6mer
736-758
0.011
0
6mer
2140-2165
0.008
0
XLOC_010289
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021708
Biotype: transcript isomorph
Gene id: XLOC_010289
Gene Name: XLOC_010289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-608
0.013
0
8mer
671-691
0.005
0
8mer
1136-1160
0.005
0
6mer
963-989
0.004
1
6mer
182-202
0.004
0
STARD13-AS
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609536
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
RP5-997D16.2
hsa-miR-20a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429293
Biotype: antisense
Gene id: ENSG00000230163
Gene Name: RP5-997D16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-564
0.030
3
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