LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
CTBP1-AS2
hsa-miR-20a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2327-2347
0.023
0
6mer
175-191
0.009
1
RP11-244B22.6
hsa-miR-20a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
797-817
0.024
0
6mer
950-976
0.008
0
CTD-2313F11.1
hsa-miR-20a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608929
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-300
0.032
1
XLOC_012728
hsa-miR-20a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5037-5061
0.009
0
8mer
4237-4259
0.008
0
6mer
4981-5003
0.006
2
6mer
4567-4584
0.004
0
6mer
1377-1392
0.003
2
6mer
3815-3827
0.002
1
XLOC_005077
hsa-miR-20a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-680
0.012
1
8mer
2313-2330
0.008
0
6mer
5330-5344
0.003
4
7mer
3009-3020
0.003
2
6mer
4911-4931
0.002
3
6mer
3064-3078
0.001
1
6mer
5729-5751
0.001
0
6mer
5253-5272
0.001
0
XLOC_000648
hsa-miR-20a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001360
Biotype: transcript isomorph
Gene id: XLOC_000648
Gene Name: XLOC_000648
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1232-1255
0.031
1
CASC16
hsa-miR-20a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000510238
Biotype: lincRNA
Gene id: ENSG00000249231
Gene Name: CASC16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-722
0.031
1
RP11-415D17.3
hsa-miR-20a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440220
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-252
0.031
9
SOCS2-AS1
hsa-miR-20a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499137
Biotype: antisense
Gene id: ENSG00000246985
Gene Name: SOCS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1292-1309
0.012
0
7mer
2177-2202
0.008
0
8mer
659-683
0.008
0
7mer
1493-1519
0.004
0
RP11-415D17.3
hsa-miR-20a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591821
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-226
0.031
9
RP11-529E10.7
hsa-miR-20a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602543
Biotype: lincRNA
Gene id: ENSG00000270090
Gene Name: RP11-529E10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-210
0.031
0
CTD-2130F23.1
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506429
Biotype: lincRNA
Gene id: ENSG00000248533
Gene Name: CTD-2130F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-43
0.031
0
HCG18
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454269
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-110
0.021
1
6mer
188-211
0.006
1
6mer
1039-1062
0.002
2
6mer
1304-1308
0.002
0
RP11-50C13.2
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561202
Biotype: sense_intronic
Gene id: ENSG00000259476
Gene Name: RP11-50C13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1596-1618
0.015
2
7mer
1282-1305
0.012
4
6mer
1300-1322
0.004
4
CMB9-55A18.1
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000601906
Biotype: antisense
Gene id: ENSG00000269570
Gene Name: CMB9-55A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-566
0.026
7
6mer
974-995
0.005
4
GRIK1-AS2
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_033368.1
Biotype: sense
Gene id: NR_033368.1 (gene)
Gene Name: GRIK1-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-501
0.031
11
CTA-929C8.6
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426467
Biotype: lincRNA
Gene id: ENSG00000226741
Gene Name: CTA-929C8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
765-791
0.031
4
RP11-557H15.3
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422736
Biotype: lincRNA
Gene id: ENSG00000231971
Gene Name: RP11-557H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-309
0.024
3
6mer
80-101
0.007
3
XLOC_000951
hsa-miR-20a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001623
Biotype: transcript isomorph
Gene id: XLOC_000951
Gene Name: XLOC_000951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-218
0.031
2
XLOC_013293
hsa-miR-20a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027290
Biotype: transcript isomorph
Gene id: XLOC_013293
Gene Name: XLOC_013293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-33
0.031
3
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