LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-20a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-513I15.6
hsa-miR-20a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3236-3255
0.013
1
8mer
2247-2268
0.007
1
7mer
6271-6285
0.006
1
6mer
6782-6807
0.005
0
6mer
6226-6245
0.003
2
RP11-303E16.2
hsa-miR-20a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566639
Biotype: sense_intronic
Gene id: ENSG00000261061
Gene Name: RP11-303E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-33
0.030
0
6mer
314-319
0.003
Not Conserved
CTD-2313F11.1
hsa-miR-20a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000618221
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-260
0.034
1
RP4-809F18.2
hsa-miR-20a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539588
Biotype: lincRNA
Gene id: ENSG00000257061
Gene Name: RP4-809F18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
643-663
0.034
0
XLOC_009517
hsa-miR-20a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019720
Biotype: transcript isomorph
Gene id: XLOC_009517
Gene Name: XLOC_009517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-239
0.025
2
6mer
1216-1237
0.004
0
6mer
1095-1111
0.004
1
XLOC_012083
hsa-miR-20a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025807
Biotype: transcript isomorph
Gene id: XLOC_012083
Gene Name: XLOC_012083
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
792-814
0.024
1
7mer
645-668
0.010
Not Conserved
XLOC_000506
hsa-miR-20a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000359
Biotype: transcript isomorph
Gene id: XLOC_000506
Gene Name: XLOC_000506
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-255
0.027
1
6mer
273-283
0.006
0
ZNF561-AS1
hsa-miR-20a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587536
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-118
0.033
1
XLOC_007180
hsa-miR-20a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015133
Biotype: transcript isomorph
Gene id: XLOC_007180
Gene Name: XLOC_007180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-215
0.017
1
7mer
298-324
0.010
0
6mer
103-121
0.006
2
XLOC_012613
hsa-miR-20a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-469
0.028
0
6mer
552-572
0.005
0
XLOC_013995
hsa-miR-20a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-181
0.018
0
7mer
577-594
0.009
0
6mer
665-687
0.004
0
6mer
2204-2226
0.001
Not Conserved
TEX41
hsa-miR-20a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414195
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-663
0.033
5
RP4-753D4.2
hsa-miR-20a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412519
Biotype: antisense
Gene id: ENSG00000227599
Gene Name: RP4-753D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
763-778
0.024
1
6mer
1534-1554
0.006
1
6mer
1033-1056
0.003
2
MALAT1
hsa-miR-20a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-520
0.010
1
7mer
887-904
0.006
Not Conserved
6mer
446-470
0.004
0
7mer
5506-5522
0.004
2
6mer
6008-6035
0.003
6
6mer
7121-7133
0.003
5
6mer
7721-7734
0.002
2
6mer
6253-6268
0.002
2
RP11-340I6.8
hsa-miR-20a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450544
Biotype: lincRNA
Gene id: ENSG00000226581
Gene Name: RP11-340I6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-267
0.033
0
ZNF561-AS1
hsa-miR-20a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592851
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-88
0.033
1
XLOC_005703
hsa-miR-20a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012157
Biotype: transcript isomorph
Gene id: XLOC_005703
Gene Name: XLOC_005703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-88
0.033
1
RP11-756H6.1
hsa-miR-20a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547552
Biotype: lincRNA
Gene id: ENSG00000258001
Gene Name: RP11-756H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-235
0.033
2
RP11-18B16.2
hsa-miR-20a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428292
Biotype: lincRNA
Gene id: ENSG00000227482
Gene Name: RP11-18B16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
863-883
0.029
2
6mer
549-569
0.004
1
XLOC_003130
hsa-miR-20a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007175
Biotype: transcript isomorph
Gene id: XLOC_003130
Gene Name: XLOC_003130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-35
0.033
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept