LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000620
hsa-miR-20a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002260
Biotype: transcript isomorph
Gene id: XLOC_000620
Gene Name: XLOC_000620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1065-1086
0.019
1
6mer
229-247
0.015
1
RP4-671O14.6
hsa-miR-20a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2751-2771
0.007
1
8mer
11041-11065
0.005
1
8mer
10525-10549
0.005
0
8mer
11705-11722
0.004
0
8mer
11389-11416
0.003
0
8mer
5167-5191
0.003
1
6mer
6516-6541
0.002
0
6mer
7084-7099
0.002
0
6mer
12111-12131
0.002
1
6mer
9423-9445
0.001
1
6mer
3095-3112
0.001
1
SSBP3-AS1
hsa-miR-20a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000361350
Biotype: antisense
Gene id: ENSG00000198711
Gene Name: SSBP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-219
0.014
0
6mer
2535-2555
0.014
7
8mer
1855-1872
0.006
0
RP11-513O17.3
hsa-miR-20a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522622
Biotype: lincRNA
Gene id: ENSG00000253614
Gene Name: RP11-513O17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2533-2557
0.021
0
7mer
2017-2032
0.005
0
6mer
468-492
0.005
1
6mer
748-772
0.003
0
PCAT19
hsa-miR-20a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1178-1198
0.025
1
6mer
2233-2258
0.005
1
6mer
2130-2156
0.004
1
CTD-2201G3.1
hsa-miR-20a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000416046
Biotype: antisense
Gene id: ENSG00000232633
Gene Name: CTD-2201G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
477-497
0.034
1
RP11-346C20.4
hsa-miR-20a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000606272
Biotype: lincRNA
Gene id: ENSG00000272250
Gene Name: RP11-346C20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-445
0.034
0
RP11-576N17.5
hsa-miR-20a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515670
Biotype: lincRNA
Gene id: ENSG00000250057
Gene Name: RP11-576N17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-138
0.034
1
LOC401324
hsa-miR-20a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-340
0.024
0
7mer
2697-2722
0.007
0
6mer
2136-2153
0.003
8
LAMTOR5-AS1
hsa-miR-20a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612551
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-536
0.024
1
7mer
440-462
0.010
1
XLOC_008207
hsa-miR-20a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-622
0.020
3
6mer
214-239
0.004
1
6mer
1146-1161
0.003
5
6mer
3890-3910
0.003
1
6mer
2124-2142
0.002
2
6mer
1659-1685
0.002
1
LOC100507577
hsa-miR-20a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040677.1
Biotype: sense
Gene id: NR_040677.1 (gene)
Gene Name: LOC100507577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2142-2161
0.031
1
6mer
2022-2036
0.003
0
H19
hsa-miR-20a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000442037
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
661-686
0.034
1
RP11-755B10.3
hsa-miR-20a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465933
Biotype: lincRNA
Gene id: ENSG00000241933
Gene Name: RP11-755B10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2878-2901
0.014
0
8mer
2664-2688
0.014
0
8mer
2365-2387
0.006
0
RP11-121C2.2
hsa-miR-20a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000563286
Biotype: lincRNA
Gene id: ENSG00000259959
Gene Name: RP11-121C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1266-1290
0.024
2
7mer
1148-1171
0.006
1
6mer
1406-1421
0.002
1
6mer
1072-1086
0.001
1
6mer
1085-1110
0.001
1
SSBP3-AS1
hsa-miR-20a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103541.1
Biotype: antisense
Gene id: NR_103541.1 (gene)
Gene Name: SSBP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2532-2552
0.014
7
7mer
199-216
0.014
0
8mer
1852-1869
0.006
0
ZNF561-AS1
hsa-miR-20a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616951
Biotype: processed_transcript
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-82
0.034
1
AC009501.4
hsa-miR-20a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429952
Biotype: antisense
Gene id: ENSG00000231609
Gene Name: AC009501.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-476
0.019
4
6mer
594-610
0.007
8
6mer
224-243
0.007
7
XLOC_010306
hsa-miR-20a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021725
Biotype: transcript isomorph
Gene id: XLOC_010306
Gene Name: XLOC_010306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1139-1164
0.031
2
6mer
283-303
0.003
Not Conserved
XLOC_005514
hsa-miR-20a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1410-1434
0.011
1
7mer
2369-2394
0.011
1
6mer
2080-2084
0.005
Not Conserved
6mer
871-889
0.004
2
6mer
1174-1199
0.002
0
7mer
1191-1213
0.001
1
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