LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-909M7.3
hsa-miR-20a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
712-729
0.020
0
7mer
881-900
0.015
1
RP11-357D18.1
hsa-miR-20a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515184
Biotype: retained_intron
Gene id: ENSG00000250978
Gene Name: RP11-357D18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-55
0.032
0
6mer
301-321
0.004
2
SUCLG2-AS1
hsa-miR-20a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482677
Biotype: lincRNA
Gene id: ENSG00000241316
Gene Name: SUCLG2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
758-779
0.021
0
7mer
1439-1462
0.006
1
8mer
1602-1626
0.005
0
6mer
38-57
0.003
0
CTA-212A2.3
hsa-miR-20a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8294-8320
0.007
1
8mer
13519-13539
0.004
0
8mer
2777-2797
0.004
0
8mer
6827-6847
0.004
1
6mer
732-759
0.003
0
8mer
7168-7188
0.003
0
8mer
3378-3402
0.003
0
8mer+wobble
2208-2229
0.002
0
6mer
8858-8869
0.002
1
6mer
9935-9953
0.002
0
6mer
12666-12690
0.001
Not Conserved
CTD-3193O13.12
hsa-miR-20a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000539278
Biotype: antisense
Gene id: ENSG00000214248
Gene Name: CTD-3193O13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-357
0.021
4
6mer
504-522
0.007
6
8mer
3820-3839
0.005
1
6mer
4053-4078
0.003
3
XLOC_001430
hsa-miR-20a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003638
Biotype: transcript isomorph
Gene id: XLOC_001430
Gene Name: XLOC_001430
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
497-520
0.029
0
6mer
231-249
0.004
0
6mer
588-606
0.003
1
CTD-2525I3.6
hsa-miR-20a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594379
Biotype: antisense
Gene id: ENSG00000269535
Gene Name: CTD-2525I3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1718-1742
0.012
0
7mer
1052-1077
0.011
1
7mer
8-30
0.010
0
6mer
421-440
0.003
Not Conserved
XLOC_012630
hsa-miR-20a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1382
0.011
0
6mer
1949-1968
0.008
0
6mer
498-513
0.008
0
6mer
807-829
0.006
0
6mer
1002-1010
0.002
Not Conserved
RP11-132A1.3
hsa-miR-20a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429254
Biotype: antisense
Gene id: ENSG00000232301
Gene Name: RP11-132A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
697-719
0.035
1
RP11-417O18.2
hsa-miR-20a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620052
Biotype: lincRNA
Gene id: ENSG00000276487
Gene Name: RP11-417O18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-458
0.035
1
RP11-798L4.1
hsa-miR-20a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000381217
Biotype: lincRNA
Gene id: ENSG00000205682
Gene Name: RP11-798L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1779-1805
0.023
0
8mer
421-445
0.012
0
RP4-545C24.1
hsa-miR-20a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460955
Biotype: antisense
Gene id: ENSG00000244198
Gene Name: RP4-545C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-556
0.035
1
BIRC6-AS1
hsa-miR-20a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455572
Biotype: antisense
Gene id: ENSG00000230046
Gene Name: BIRC6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-99
0.015
2
6mer
5-32
0.015
12
6mer
154-170
0.005
1
XLOC_010463
hsa-miR-20a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-666
0.006
2
7mer
10980-10999
0.006
1
8mer
6754-6776
0.003
1
6mer
4556-4577
0.003
5
6mer
988-1013
0.003
1
6mer
10823-10844
0.002
1
6mer
3759-3777
0.002
3
6mer
2135-2158
0.002
1
6mer
9996-10014
0.002
1
6mer
1748-1773
0.002
0
6mer
2489-2502
0.002
1
6mer
2614-2633
0.001
1
6mer
10065-10089
0.001
0
XLOC_012077
hsa-miR-20a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025270
Biotype: transcript isomorph
Gene id: XLOC_012077
Gene Name: XLOC_012077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-466
0.019
0
8mer
275-302
0.016
0
XLOC_000695
hsa-miR-20a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-323
0.020
1
8mer
2876-2894
0.008
1
6mer
2928-2938
0.004
Not Conserved
7mer
2004-2024
0.003
0
RP3-523K23.2
hsa-miR-20a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562834
Biotype: sense_overlapping
Gene id: ENSG00000261116
Gene Name: RP3-523K23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-289
0.022
2
6mer
622-647
0.005
4
6mer
1625-1649
0.005
1
6mer
1128-1153
0.003
1
XLOC_009474
hsa-miR-20a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2539-2562
0.012
1
7mer
4885-4912
0.011
6
6mer
498-522
0.003
0
7mer
4497-4516
0.003
0
6mer
3937-3957
0.002
3
6mer
6157-6176
0.002
4
6mer
3171-3188
0.002
0
6mer
3914-3941
0.001
6
LINC00561
hsa-miR-20a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565815
Biotype: lincRNA
Gene id: ENSG00000261206
Gene Name: LINC00561
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-82
0.020
2
7mer
23-43
0.015
1
CTA-732E4.1
hsa-miR-20a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624817
Biotype: antisense
Gene id: ENSG00000280258
Gene Name: CTA-732E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-180
0.028
3
8mer
2782-2802
0.003
0
6mer
3824-3837
0.002
1
8mer+wobble
3087-3112
0.002
1
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