LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-582J16.4
hsa-miR-20a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-164
0.017
2
8mer
452-472
0.011
0
6mer
496-517
0.004
1
6mer
2213-2236
0.001
1
LINC00269
hsa-miR-20a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000399711
Biotype: lincRNA
Gene id: ENSG00000215162
Gene Name: LINC00269
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-281
0.032
1
6mer
451-467
0.002
Not Conserved
6mer
1113-1132
0.002
0
HCG11
hsa-miR-20a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411553
Biotype: lincRNA
Gene id: ENSG00000228223
Gene Name: HCG11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1928-1948
0.012
1
6mer
698-711
0.011
1
6mer
990-1010
0.006
0
6mer
1611-1631
0.005
1
6mer
1159-1176
0.003
0
AC096669.3
hsa-miR-20a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439893
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-199
0.036
1
RP11-545A16.1
hsa-miR-20a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-206
0.029
0
7mer
3004-3029
0.007
Not Conserved
LINC01024
hsa-miR-20a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522747
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-141
0.023
1
8mer
805-818
0.013
0
XLOC_004502
hsa-miR-20a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010054
Biotype: transcript isomorph
Gene id: XLOC_004502
Gene Name: XLOC_004502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-370
0.036
1
CTC-273B12.5
hsa-miR-20a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600529
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-58
0.036
Not Conserved
PPP1R26-AS1
hsa-miR-20a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603624
Biotype: antisense
Gene id: ENSG00000225361
Gene Name: PPP1R26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-69
0.023
1
6mer
312-334
0.005
0
6mer
804-812
0.003
1
6mer
1329-1354
0.003
0
6mer
2465-2485
0.003
0
XLOC_006901
hsa-miR-20a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014831
Biotype: transcript isomorph
Gene id: XLOC_006901
Gene Name: XLOC_006901
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-141
0.028
1
6mer
69-93
0.008
1
AP000479.1
hsa-miR-20a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526436
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1227
0.034
1
6mer
1518-1536
0.002
0
XLOC_005753
hsa-miR-20a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012196
Biotype: transcript isomorph
Gene id: XLOC_005753
Gene Name: XLOC_005753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4012-4035
0.019
Not Conserved
6mer
20-46
0.005
1
6mer
3665-3685
0.004
0
6mer
1567-1583
0.003
2
6mer
3281-3305
0.002
0
6mer
2132-2157
0.002
1
6mer
2468-2493
0.002
0
RP11-1299A16.3
hsa-miR-20a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569927
Biotype: antisense
Gene id: ENSG00000260641
Gene Name: RP11-1299A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
739-759
0.020
3
6mer
5576-5592
0.013
6
6mer
990-1010
0.003
3
XLOC_001265
hsa-miR-20a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4898-4923
0.020
0
7mer
398-415
0.006
1
6mer
444-467
0.004
2
6mer
1886-1911
0.003
2
6mer
485-502
0.003
1
RP11-473M20.16
hsa-miR-20a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-198
0.027
1
6mer
454-474
0.008
1
RP11-242F24.1
hsa-miR-20a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432429
Biotype: lincRNA
Gene id: ENSG00000228750
Gene Name: RP11-242F24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1153-1176
0.023
0
8mer
1368-1392
0.012
0
RP11-580I1.1
hsa-miR-20a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568541
Biotype: lincRNA
Gene id: ENSG00000260780
Gene Name: RP11-580I1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-147
0.036
0
XLOC_011448
hsa-miR-20a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9562-9586
0.012
1
7mer
8101-8122
0.009
3
8mer
9261-9285
0.006
0
8mer
902-926
0.004
0
6mer
9834-9849
0.004
3
ZNF561-AS1
hsa-miR-20a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591056
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-116
0.029
1
6mer
496-510
0.006
0
RP11-2H8.2
hsa-miR-20a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-176
0.017
1
7mer
1156-1177
0.015
1
6mer
775-793
0.003
1
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