LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-545I5.3
hsa-miR-20a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1313
0.020
1
7mer
2976-2997
0.007
1
6mer
2871-2893
0.004
1
6mer
595-614
0.004
2
6mer
989-1005
0.002
0
LINC01210
hsa-miR-20a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478772
Biotype: lincRNA
Gene id: ENSG00000239513
Gene Name: LINC01210
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1009-1033
0.037
1
RP11-526P5.2
hsa-miR-20a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438753
Biotype: lincRNA
Gene id: ENSG00000235281
Gene Name: RP11-526P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-655
0.037
2
CTC-273B12.5
hsa-miR-20a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596497
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-43
0.037
Not Conserved
RP4-717I23.3
hsa-miR-20a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429859
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-307
0.025
3
6mer
52-72
0.012
8
XLOC_005773
hsa-miR-20a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011224
Biotype: transcript isomorph
Gene id: XLOC_005773
Gene Name: XLOC_005773
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-146
0.018
0
7mer
454-466
0.015
2
6mer
96-120
0.004
1
CTA-929C8.9
hsa-miR-20a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16197-16218
0.009
1
7mer
14540-14561
0.004
0
8mer
1621-1645
0.004
1
7mer
16773-16788
0.002
0
6mer
10649-10669
0.002
0
6mer
6345-6365
0.002
1
6mer
13318-13344
0.002
0
6mer
5639-5660
0.002
1
6mer
14388-14415
0.002
1
6mer
13849-13875
0.002
0
6mer
22510-22531
0.002
0
6mer
2405-2419
0.001
1
6mer
9607-9625
0.001
0
6mer
17141-17160
0.001
0
RP11-491F9.5
hsa-miR-20a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564048
Biotype: lincRNA
Gene id: ENSG00000260769
Gene Name: RP11-491F9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1276-1303
0.036
1
SATB1-AS1
hsa-miR-20a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438418
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.036
1
SATB1-AS1
hsa-miR-20a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610002
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.036
1
XLOC_011567
hsa-miR-20a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023771
Biotype: transcript isomorph
Gene id: XLOC_011567
Gene Name: XLOC_011567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-224
0.012
1
8mer
174-198
0.010
1
7mer
359-380
0.010
1
6mer
371-393
0.004
0
XLOC_000918
hsa-miR-20a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000020
Biotype: transcript isomorph
Gene id: XLOC_000918
Gene Name: XLOC_000918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-52
0.024
3
8mer
2031-2051
0.008
3
6mer
3651-3673
0.002
3
6mer
931-953
0.002
1
RP5-1065J22.8
hsa-miR-20a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608574
Biotype: antisense
Gene id: ENSG00000273382
Gene Name: RP5-1065J22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2155-2175
0.010
Not Conserved
7mer
1718-1739
0.008
3
8mer
699-723
0.007
1
8mer
2288-2307
0.006
1
8mer
1044-1068
0.004
1
6mer
1671-1692
0.001
1
RP11-611E13.2
hsa-miR-20a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553135
Biotype: antisense
Gene id: ENSG00000257815
Gene Name: RP11-611E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-201
0.036
1
RP11-74E22.8
hsa-miR-20a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614400
Biotype: lincRNA
Gene id: ENSG00000277200
Gene Name: RP11-74E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3043-3067
0.028
7
8mer
2651-2671
0.006
0
6mer
1317-1335
0.003
5
XLOC_013363
hsa-miR-20a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026818
Biotype: transcript isomorph
Gene id: XLOC_013363
Gene Name: XLOC_013363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2058-2074
0.027
0
6mer
3194-3209
0.007
0
6mer
2258-2284
0.003
0
SVIL-AS1
hsa-miR-20a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-195
0.032
1
6mer
190-204
0.004
0
XLOC_008087
hsa-miR-20a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017273
Biotype: transcript isomorph
Gene id: XLOC_008087
Gene Name: XLOC_008087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-164
0.036
1
XLOC_011484
hsa-miR-20a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1208-1232
0.025
0
6mer
2748-2771
0.011
0
AC124861.1
hsa-miR-20a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457178
Biotype: lincRNA
Gene id: ENSG00000227479
Gene Name: AC124861.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-420
0.036
2
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