LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-20a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTD-2293H3.1
hsa-miR-20a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588369
Biotype: sense_intronic
Gene id: ENSG00000267672
Gene Name: CTD-2293H3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-77
0.016
0
6mer
998-1015
0.008
1
6mer
770-786
0.007
6
6mer
673-696
0.004
0
6mer
1106-1130
0.003
1
RP11-1136G4.1
hsa-miR-20a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561591
Biotype: lincRNA
Gene id: ENSG00000261171
Gene Name: RP11-1136G4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-31
0.038
6
CTC-273B12.5
hsa-miR-20a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593476
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-40
0.038
Not Conserved
XLOC_008245
hsa-miR-20a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017380
Biotype: transcript isomorph
Gene id: XLOC_008245
Gene Name: XLOC_008245
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-308
0.038
0
XLOC_003513
hsa-miR-20a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008048
Biotype: transcript isomorph
Gene id: XLOC_003513
Gene Name: XLOC_003513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-296
0.038
1
RP11-274B21.9
hsa-miR-20a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605007
Biotype: lincRNA
Gene id: ENSG00000271344
Gene Name: RP11-274B21.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1252-1266
0.031
1
6mer
106-125
0.006
1
LOC100130872
hsa-miR-20a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_024569.1
Biotype: sense
Gene id: NR_024569.1 (gene)
Gene Name: LOC100130872
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1827-1847
0.023
0
7mer
3079-3105
0.007
1
7mer
2248-2261
0.004
0
7mer
1582-1603
0.002
0
6mer
2458-2482
0.002
1
XLOC_013866
hsa-miR-20a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4177-4196
0.016
1
6mer
520-539
0.005
1
6mer
60-72
0.003
0
6mer
2871-2895
0.003
3
6mer
692-717
0.003
1
7mer
2568-2587
0.002
Not Conserved
6mer
665-688
0.002
2
6mer
1419-1442
0.002
1
6mer
2556-2578
0.002
1
XLOC_012051
hsa-miR-20a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024776
Biotype: transcript isomorph
Gene id: XLOC_012051
Gene Name: XLOC_012051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
356-379
0.037
0
XLOC_009484
hsa-miR-20a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019684
Biotype: transcript isomorph
Gene id: XLOC_009484
Gene Name: XLOC_009484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-202
0.017
1
8mer
790-809
0.013
1
6mer
95-111
0.008
1
RP11-361F15.2
hsa-miR-20a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1095-1107
0.019
4
7mer
155-173
0.012
1
6mer
867-881
0.003
4
6mer
914-928
0.002
1
UCKL1-AS1
hsa-miR-20a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027287.1
Biotype: antisense
Gene id: NR_027287.1 (gene)
Gene Name: UCKL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-75
0.025
1
6mer
3446-3465
0.012
9
C12orf36
hsa-miR-20a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2010
0.033
2
7mer
1843-1870
0.003
0
6mer
1971-1991
0.002
Not Conserved
LINC01526
hsa-miR-20a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441949
Biotype: lincRNA
Gene id: ENSG00000224995
Gene Name: LINC01526
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-148
0.018
0
7mer
456-468
0.016
2
6mer
98-122
0.004
1
MEG3
hsa-miR-20a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000523671
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-529
0.034
4
6mer
1809-1826
0.003
1
XLOC_008737
hsa-miR-20a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018445
Biotype: transcript isomorph
Gene id: XLOC_008737
Gene Name: XLOC_008737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1473-1497
0.012
1
8mer
2446-2466
0.011
1
7mer
1954-1968
0.007
0
6mer
245-264
0.004
0
8mer
1327-1347
0.003
1
MGC27345
hsa-miR-20a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9379-9399
0.017
1
8mer
7899-7919
0.007
0
7mer
7697-7712
0.005
3
6mer
8830-8849
0.003
3
6mer
2529-2542
0.002
1
6mer
5508-5534
0.001
1
6mer
3695-3718
0.001
1
XLOC_005332
hsa-miR-20a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-186
0.017
1
7mer
1094-1120
0.012
0
6mer
47-65
0.008
0
RP4-717I23.3
hsa-miR-20a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446528
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-338
0.025
3
6mer
83-103
0.012
8
ERC2-IT1
hsa-miR-20a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024615.1
Biotype: sense
Gene id: NR_024615.1 (gene)
Gene Name: ERC2-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
664-679
0.026
2
7mer
600-622
0.007
1
6mer
1250-1271
0.002
1
6mer
515-539
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept