LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
MIR222HG
hsa-miR-20a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602461
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1176-1201
0.043
8
RP11-315E17.1
hsa-miR-20a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550272
Biotype: antisense
Gene id: ENSG00000258162
Gene Name: RP11-315E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
674-698
0.043
0
RP1-79C4.4
hsa-miR-20a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606154
Biotype: lincRNA
Gene id: ENSG00000271811
Gene Name: RP1-79C4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-27
0.036
1
6mer
1688-1697
0.003
1
6mer
660-686
0.003
0
RP11-384G23.1
hsa-miR-20a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615176
Biotype: lincRNA
Gene id: ENSG00000273919
Gene Name: RP11-384G23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1623-1645
0.026
1
6mer
1580-1597
0.005
3
6mer
1774-1794
0.005
1
6mer
577-593
0.003
1
6mer
374-395
0.003
1
LINC00520
hsa-miR-20a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_026797.1
Biotype: lincRNA
Gene id: NR_026797.1 (gene)
Gene Name: LINC00520
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-84
0.037
1
6mer
259-285
0.005
1
RP11-380B4.3
hsa-miR-20a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1017
0.009
2
6mer
495-519
0.006
2
6mer
5262-5288
0.005
0
7mer
4483-4507
0.005
0
7mer
3910-3933
0.004
0
6mer
4399-4422
0.003
2
6mer
1133-1160
0.003
3
6mer
2323-2344
0.002
0
6mer
2741-2766
0.002
1
6mer
1006-1023
0.002
1
6mer
3091-3107
0.001
0
XLOC_012676
hsa-miR-20a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026329
Biotype: transcript isomorph
Gene id: XLOC_012676
Gene Name: XLOC_012676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-240
0.033
1
7mer
308-334
0.010
1
ATP1A1-AS1
hsa-miR-20a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608511
Biotype: processed_transcript
Gene id: ENSG00000203865
Gene Name: ATP1A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
646-670
0.042
4
XLOC_011696
hsa-miR-20a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
563-584
0.042
0
CASC7
hsa-miR-20a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1057-1074
0.015
11
8mer
6101-6123
0.009
5
7mer
2745-2764
0.008
5
6mer
8808-8833
0.005
1
6mer
712-738
0.003
2
6mer
5703-5723
0.002
3
6mer
6126-6143
0.002
2
XLOC_012784
hsa-miR-20a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
261-276
0.014
0
6mer
470-491
0.011
0
6mer
1226-1250
0.007
0
6mer
892-916
0.007
0
6mer
2099-2114
0.004
Not Conserved
CTA-243E7.1
hsa-miR-20a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-327
0.015
1
8mer
855-879
0.009
1
8mer
12200-12224
0.006
1
8mer
5780-5800
0.005
1
8mer
8321-8345
0.003
0
6mer
6244-6265
0.002
1
6mer
11071-11096
0.002
0
7mer
4007-4027
0.001
0
RP11-739B23.1
hsa-miR-20a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598970
Biotype: antisense
Gene id: ENSG00000268635
Gene Name: RP11-739B23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2844-2868
0.021
1
8mer
2100-2118
0.009
0
8mer
3348-3372
0.007
0
6mer
274-287
0.005
4
XLOC_011604
hsa-miR-20a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023827
Biotype: transcript isomorph
Gene id: XLOC_011604
Gene Name: XLOC_011604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-334
0.042
1
MIR181A1HG
hsa-miR-20a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_040073.1
Biotype: lincRNA
Gene id: NR_040073.1 (gene)
Gene Name: MIR181A1HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-542
0.035
3
6mer
531-552
0.007
5
RP11-451G4.2
hsa-miR-20a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037902.1
Biotype: lincRNA
Gene id: NR_037902.1 (gene)
Gene Name: RP11-451G4.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-276
0.019
1
7mer
510-530
0.017
3
7mer
482-505
0.006
0
RGS5
hsa-miR-20a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528019
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-437
0.042
1
XLOC_012551
hsa-miR-20a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025730
Biotype: transcript isomorph
Gene id: XLOC_012551
Gene Name: XLOC_012551
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-253
0.037
3
6mer
39-60
0.004
0
RP11-1L9.1
hsa-miR-20a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446964
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-325
0.042
1
RGS5
hsa-miR-20a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439699
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1301-1318
0.038
1
6mer
890-903
0.003
0
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