LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
AC005220.3
hsa-miR-20a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450473
Biotype: antisense
Gene id: ENSG00000236352
Gene Name: AC005220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-198
0.044
1
RP11-733C7.1
hsa-miR-20a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507220
Biotype: lincRNA
Gene id: ENSG00000249091
Gene Name: RP11-733C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-259
0.026
2
7mer
266-288
0.017
1
LL22NC03-22D1.1
hsa-miR-20a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-123
0.007
3
7mer
4574-4599
0.006
0
7mer
18523-18538
0.005
1
8mer
3878-3898
0.003
1
6mer
13366-13385
0.003
5
7mer
2482-2498
0.003
0
6mer
18736-18754
0.003
2
6mer
7767-7779
0.002
1
6mer
17233-17250
0.002
0
6mer
12018-12035
0.002
1
6mer
23962-23970
0.001
0
6mer
11471-11488
0.001
0
6mer
8463-8473
0.001
Not Conserved
6mer
17702-17723
0.001
0
6mer
19719-19745
0.001
0
6mer
27146-27162
0.001
Not Conserved
HOXA-AS2
hsa-miR-20a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593438
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
468-482
0.036
1
7mer
451-475
0.008
0
XLOC_007690
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-133
0.036
1
6mer
757-775
0.008
1
RP11-342H21.2
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456389
Biotype: antisense
Gene id: ENSG00000231080
Gene Name: RP11-342H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
829-850
0.024
1
7mer
70-93
0.014
1
6mer
598-610
0.005
1
HNF1A-AS1
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535301
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-335
0.043
5
XLOC_008455
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018163
Biotype: transcript isomorph
Gene id: XLOC_008455
Gene Name: XLOC_008455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
543-560
0.037
1
6mer
696-716
0.006
0
RP11-7K24.3
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562471
Biotype: lincRNA
Gene id: ENSG00000261068
Gene Name: RP11-7K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1659-1683
0.014
0
7mer
1608-1627
0.010
1
8mer
1373-1397
0.010
1
6mer
54-66
0.004
0
7mer
1095-1110
0.003
Not Conserved
6mer
1054-1074
0.002
0
XLOC_010670
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1861-1888
0.043
1
RP11-631N16.2
hsa-miR-20a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1089-1108
0.029
0
8mer
3833-3852
0.010
2
6mer
7360-7375
0.002
0
6mer
4147-4167
0.002
1
6mer
4974-4995
0.001
1
AC012506.3
hsa-miR-20a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426527
Biotype: lincRNA
Gene id: ENSG00000223634
Gene Name: AC012506.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-418
0.043
1
XLOC_005136
hsa-miR-20a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012402
Biotype: transcript isomorph
Gene id: XLOC_005136
Gene Name: XLOC_005136
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-372
0.043
2
TMEM108-AS1
hsa-miR-20a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2179-2204
0.043
0
XLOC_013753
hsa-miR-20a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027891
Biotype: transcript isomorph
Gene id: XLOC_013753
Gene Name: XLOC_013753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
988-1009
0.028
1
8mer
492-516
0.008
1
6mer
39-63
0.007
1
XLOC_011130
hsa-miR-20a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022413
Biotype: transcript isomorph
Gene id: XLOC_011130
Gene Name: XLOC_011130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1404-1423
0.023
8
8mer
517-536
0.020
1
STK4-AS1
hsa-miR-20a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434401
Biotype: lincRNA
Gene id: ENSG00000227477
Gene Name: STK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
994-1015
0.028
1
8mer
498-522
0.008
1
6mer
45-69
0.007
1
RP11-503C24.2
hsa-miR-20a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424343
Biotype: lincRNA
Gene id: ENSG00000237987
Gene Name: RP11-503C24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-147
0.029
2
6mer
91-115
0.014
2
XLOC_012011
hsa-miR-20a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024730
Biotype: transcript isomorph
Gene id: XLOC_012011
Gene Name: XLOC_012011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5517-5541
0.013
1
8mer
5217-5241
0.009
1
8mer
447-462
0.009
1
8mer
3939-3963
0.007
1
6mer
320-342
0.005
1
XLOC_006934
hsa-miR-20a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-601
0.020
1
7mer
3808-3828
0.007
0
7mer
2477-2488
0.006
1
6mer
1689-1707
0.002
2
6mer
3443-3467
0.002
1
6mer
3312-3336
0.002
1
6mer
2279-2296
0.002
0
6mer
1400-1421
0.002
1
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