LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
GS1-358P8.4
hsa-miR-20a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1918-1941
0.035
6
6mer
311-329
0.004
1
7mer
3598-3614
0.004
1
6mer
4150-4166
0.003
0
RP11-99H8.1
hsa-miR-20a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423187
Biotype: lincRNA
Gene id: ENSG00000226208
Gene Name: RP11-99H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-96
0.031
1
8mer
311-335
0.013
1
XLOC_002542
hsa-miR-20a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004628
Biotype: transcript isomorph
Gene id: XLOC_002542
Gene Name: XLOC_002542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-638
0.038
2
7mer
383-394
0.006
0
RP1-309I22.2
hsa-miR-20a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26962-26988
0.012
0
8mer
4386-4403
0.008
0
7mer
24417-24438
0.007
6
6mer
26268-26284
0.005
11
7mer
21087-21105
0.003
1
6mer
16791-16813
0.002
0
6mer
15588-15598
0.002
2
6mer
2934-2944
0.002
2
6mer
27591-27608
0.001
1
6mer
14433-14453
0.001
2
6mer
2710-2733
0.001
0
6mer
10708-10732
0.001
1
XLOC_000623
hsa-miR-20a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000010
Biotype: transcript isomorph
Gene id: XLOC_000623
Gene Name: XLOC_000623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2166
0.022
1
8mer
1192-1215
0.012
2
7mer
1319-1343
0.007
3
6mer
645-667
0.003
1
FLJ42627
hsa-miR-20a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024492.1
Biotype: lincRNA
Gene id: NR_024492.1 (gene)
Gene Name: FLJ42627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7076-7093
0.040
2
8mer
4566-4585
0.003
0
6mer
1717-1741
0.001
1
RP5-963E22.5
hsa-miR-20a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-93
0.024
1
7mer
84-102
0.015
1
8mer
1489-1507
0.005
Not Conserved
RP11-178C3.2
hsa-miR-20a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586209
Biotype: lincRNA
Gene id: ENSG00000267302
Gene Name: RP11-178C3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-292
0.041
5
6mer
716-738
0.004
3
RP11-206L10.9
hsa-miR-20a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591440
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-740
0.044
1
RP11-218I7.2
hsa-miR-20a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-358
0.037
1
6mer
442-469
0.007
1
FAM223A
hsa-miR-20a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598177
Biotype: lincRNA
Gene id: ENSG00000272681
Gene Name: FAM223A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-74
0.044
1
NCKAP5-IT1
hsa-miR-20a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416437
Biotype: sense_intronic
Gene id: ENSG00000232474
Gene Name: NCKAP5-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-390
0.044
5
MIR4313
hsa-miR-20a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2847-2870
0.021
0
6mer
206-230
0.014
1
6mer
64-81
0.009
0
XLOC_013571
hsa-miR-20a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027955
Biotype: transcript isomorph
Gene id: XLOC_013571
Gene Name: XLOC_013571
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-198
0.044
1
AC144831.1
hsa-miR-20a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573312
Biotype: lincRNA
Gene id: ENSG00000261888
Gene Name: AC144831.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2351-2373
0.027
1
8mer
371-395
0.011
0
6mer
2071-2096
0.005
1
LINC00184
hsa-miR-20a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429269
Biotype: lincRNA
Gene id: ENSG00000224939
Gene Name: LINC00184
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2166
0.022
1
8mer
1192-1215
0.012
2
7mer
1319-1343
0.007
3
6mer
645-667
0.003
1
AC087430.1
hsa-miR-20a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-204
0.023
1
8mer
3430-3454
0.009
1
6mer
3158-3177
0.004
1
6mer
2966-2993
0.003
1
6mer
2509-2521
0.003
1
6mer
1382-1406
0.002
0
LINC01492
hsa-miR-20a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425157
Biotype: lincRNA
Gene id: ENSG00000225564
Gene Name: LINC01492
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-402
0.033
5
6mer
118-133
0.007
1
6mer
301-325
0.004
2
XLOC_003808
hsa-miR-20a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007688
Biotype: transcript isomorph
Gene id: XLOC_003808
Gene Name: XLOC_003808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8977-8992
0.020
2
7mer
6441-6462
0.005
1
8mer
4672-4696
0.004
1
6mer
1069-1090
0.003
3
8mer
1436-1460
0.003
0
8mer
1948-1972
0.003
0
6mer
6762-6778
0.002
2
6mer
3318-3333
0.002
2
6mer
6130-6149
0.002
1
AC004448.5
hsa-miR-20a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-115
0.044
1
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