LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RGS5
hsa-miR-20a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528818
Biotype: retained_intron
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-462
0.041
1
6mer
260-280
0.006
1
PWAR6
hsa-miR-20a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4226-4251
0.029
2
6mer
4576-4595
0.007
0
6mer
777-800
0.005
2
6mer
1758-1780
0.003
1
6mer
3164-3186
0.002
1
6mer
1836-1857
0.001
1
SENCR
hsa-miR-20a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526269
Biotype: antisense
Gene id: ENSG00000254703
Gene Name: SENCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
214-241
0.033
3
6mer
555-574
0.008
6
6mer
1259-1283
0.006
1
CTC-260E6.6
hsa-miR-20a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-595
0.046
1
C1orf143
hsa-miR-20a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000491260
Biotype: lincRNA
Gene id: ENSG00000228208
Gene Name: C1orf143
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
719-745
0.035
4
7mer
535-552
0.011
Not Conserved
XLOC_007141
hsa-miR-20a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
838-856
0.046
0
RP6-191P20.4
hsa-miR-20a-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430140
Biotype: antisense
Gene id: ENSG00000236064
Gene Name: RP6-191P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-131
0.046
1
AC078883.4
hsa-miR-20a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441212
Biotype: antisense
Gene id: ENSG00000226963
Gene Name: AC078883.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-211
0.046
5
GRM7-AS3
hsa-miR-20a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445675
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
597-616
0.034
7
6mer
135-157
0.007
2
6mer
415-434
0.005
1
XLOC_007035
hsa-miR-20a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-709
0.012
Not Conserved
8mer
3870-3894
0.007
1
8mer
10199-10223
0.005
0
8mer
11003-11022
0.004
0
7mer
6332-6347
0.004
Not Conserved
8mer
9366-9390
0.003
0
8mer
6956-6980
0.003
0
6mer
6063-6080
0.003
2
6mer
9665-9691
0.002
0
6mer
14052-14063
0.001
0
6mer
8077-8095
0.001
Not Conserved
AC005083.1
hsa-miR-20a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430859
Biotype: lincRNA
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-727
0.045
0
KIZ-AS1
hsa-miR-20a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-500
0.027
1
7mer
5143-5161
0.007
2
8mer
4597-4617
0.005
0
6mer
3872-3887
0.002
5
6mer
3365-3379
0.002
2
RP11-171I2.1
hsa-miR-20a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-321
0.035
3
6mer
2042-2057
0.005
10
6mer
3225-3244
0.004
1
6mer
1189-1207
0.002
1
C1orf143
hsa-miR-20a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443836
Biotype: lincRNA
Gene id: ENSG00000228208
Gene Name: C1orf143
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
668-694
0.035
4
7mer
484-501
0.011
Not Conserved
RP11-2A4.4
hsa-miR-20a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3483-3505
0.034
1
6mer
595-611
0.006
4
6mer
3266-3283
0.002
1
6mer
1209-1225
0.002
0
6mer
1304-1327
0.001
1
ZFPM2-AS1
hsa-miR-20a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520433
Biotype: antisense
Gene id: ENSG00000251003
Gene Name: ZFPM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
327-354
0.039
1
6mer
569-581
0.006
1
XLOC_010216
hsa-miR-20a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020949
Biotype: transcript isomorph
Gene id: XLOC_010216
Gene Name: XLOC_010216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
498-520
0.040
1
6mer
549-565
0.005
1
XLOC_011480
hsa-miR-20a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024123
Biotype: transcript isomorph
Gene id: XLOC_011480
Gene Name: XLOC_011480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-427
0.045
1
RP11-522B15.3
hsa-miR-20a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558499
Biotype: lincRNA
Gene id: ENSG00000259275
Gene Name: RP11-522B15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4188-4203
0.029
1
7mer
2991-3016
0.006
0
7mer
3498-3525
0.005
0
6mer
3748-3771
0.004
3
6mer
3342-3365
0.001
2
AC010974.3
hsa-miR-20a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450509
Biotype: antisense
Gene id: ENSG00000230065
Gene Name: AC010974.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-100
0.036
2
6mer
123-137
0.008
4
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