LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
AC068039.4
hsa-miR-20a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1998-2022
0.050
0
RP11-702F3.1
hsa-miR-20a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528480
Biotype: lincRNA
Gene id: ENSG00000254653
Gene Name: RP11-702F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-298
0.024
1
6mer
541-558
0.015
8
8mer
117-144
0.011
1
XLOC_006976
hsa-miR-20a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1565-1589
0.017
1
8mer
2149-2173
0.012
0
6mer
10-26
0.008
0
6mer
1748-1765
0.008
1
6mer
1732-1750
0.004
1
6mer
1654-1674
0.001
Not Conserved
AC138430.4
hsa-miR-20a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586064
Biotype: retained_intron
Gene id: ENSG00000267629
Gene Name: AC138430.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-164
0.039
1
7mer
855-872
0.011
3
ATP6V0E2-AS1
hsa-miR-20a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488315
Biotype: antisense
Gene id: ENSG00000204934
Gene Name: ATP6V0E2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-83
0.037
Not Conserved
8mer
656-672
0.010
Not Conserved
6mer
1974-1986
0.002
0
AC092669.6
hsa-miR-20a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412313
Biotype: lincRNA
Gene id: ENSG00000225815
Gene Name: AC092669.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
884-909
0.043
3
6mer
832-859
0.006
6
TTTY15
hsa-miR-20a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
697-718
0.049
0
RP11-106M7.1
hsa-miR-20a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436932
Biotype: lincRNA
Gene id: ENSG00000228484
Gene Name: RP11-106M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1695
0.027
1
7mer
212-239
0.012
0
8mer
572-596
0.010
0
CTD-2515H24.2
hsa-miR-20a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621477
Biotype: lincRNA
Gene id: ENSG00000276772
Gene Name: CTD-2515H24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-237
0.045
2
6mer
89-110
0.004
1
XLOC_008620
hsa-miR-20a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018340
Biotype: transcript isomorph
Gene id: XLOC_008620
Gene Name: XLOC_008620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-839
0.049
2
RP11-1L9.1
hsa-miR-20a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420403
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-310
0.049
1
PROX1-AS1
hsa-miR-20a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-638
0.028
1
8mer
1948-1967
0.011
1
7mer
4303-4325
0.005
1
6mer
680-700
0.003
1
7mer
1917-1941
0.002
2
GABPB1-AS1
hsa-miR-20a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14703-14723
0.007
1
6mer
16135-16154
0.006
2
9mer
4970-4994
0.006
0
8mer
12592-12616
0.004
1
8mer
13799-13823
0.003
1
6mer
15499-15518
0.003
1
8mer
13494-13518
0.003
0
8mer
2009-2033
0.003
0
6mer
9537-9560
0.002
3
6mer
11108-11123
0.002
1
6mer
5512-5533
0.002
2
6mer
4005-4024
0.002
1
6mer
2460-2474
0.002
Not Conserved
8mer
11192-11213
0.002
0
6mer
8145-8165
0.002
Not Conserved
6mer
12009-12033
0.001
1
XIST
hsa-miR-20a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2305-2319
0.011
1
7mer
16888-16907
0.007
Not Conserved
7mer
9249-9262
0.006
3
6mer
18455-18480
0.005
2
7mer
8828-8853
0.004
1
8mer
14002-14026
0.004
1
8mer+mismatch
7348-7366
0.002
2
6mer
4528-4542
0.002
1
6mer
8464-8479
0.002
1
6mer
9094-9109
0.002
3
6mer
5035-5062
0.002
1
6mer
12500-12516
0.001
0
6mer
13190-13207
0.001
1
ZNRD1-AS1
hsa-miR-20a-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
976-1002
0.011
0
7mer
6739-6764
0.011
1
7mer
5312-5335
0.007
1
6mer
9134-9158
0.006
1
6mer
720-737
0.005
1
6mer
3997-4009
0.003
0
6mer
7329-7349
0.003
1
6mer
5075-5096
0.002
0
GRM7-AS3
hsa-miR-20a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455623
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
808-827
0.037
7
6mer
346-368
0.006
2
6mer
626-645
0.005
1
FLJ42627
hsa-miR-20a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563449
Biotype: antisense
Gene id: ENSG00000261613
Gene Name: FLJ42627
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-73
0.048
2
RP11-516C1.1
hsa-miR-20a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558047
Biotype: antisense
Gene id: ENSG00000259595
Gene Name: RP11-516C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
432-457
0.042
4
7mer
253-273
0.006
0
RP11-144G6.12
hsa-miR-20a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000431840
Biotype: processed_transcript
Gene id: ENSG00000254929
Gene Name: RP11-144G6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-906
0.038
2
XLOC_013093
hsa-miR-20a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3055-3076
0.018
2
8mer
1418-1439
0.007
1
6mer
2692-2707
0.006
0
6mer
430-447
0.006
1
6mer
1739-1756
0.004
1
6mer
1854-1874
0.004
1
6mer
1394-1416
0.002
0
6mer
1499-1526
0.001
0
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