LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
KLHL7-AS1
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419813
Biotype: lincRNA
Gene id: ENSG00000230658
Gene Name: KLHL7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
611-636
0.046
1
6mer
1816-1834
0.004
0
6mer
869-890
0.004
1
AGAP11
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-181
0.039
1
7mer
1245-1267
0.005
0
7mer
3445-3470
0.004
Not Conserved
6mer
986-1009
0.003
1
6mer
1660-1685
0.003
1
6mer
1962-1982
0.001
Not Conserved
RGS5
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526176
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-69
0.054
1
CTA-796E4.5
hsa-miR-20a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16024-16045
0.010
2
7mer
24119-24144
0.006
0
6mer
132-143
0.006
1
8mer
9297-9321
0.004
1
6mer
31169-31188
0.004
0
6mer
1982-2008
0.003
3
6mer
8151-8168
0.002
2
6mer
1371-1392
0.002
0
6mer
27339-27366
0.002
1
6mer
30552-30577
0.002
0
6mer
3282-3305
0.002
1
6mer
17487-17505
0.001
1
6mer
3094-3108
0.001
1
6mer
7544-7570
0.001
0
6mer
22036-22058
0.001
0
6mer
19761-19787
0.001
1
6mer
29354-29372
0.001
Not Conserved
6mer
8650-8674
0.001
1
7mer
8183-8202
0.001
Not Conserved
6mer
3481-3496
0.001
1
6mer
8792-8813
0.001
1
NAMA
hsa-miR-20a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1216
0.053
8
SNHG14
hsa-miR-20a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8569-8593
0.012
1
7mer
8491-8512
0.010
1
7mer
3722-3746
0.009
1
7mer
7861-7882
0.007
1
6mer
1487-1504
0.002
1
6mer
1792-1817
0.002
1
6mer
4150-4166
0.002
1
6mer
4770-4793
0.002
1
6mer
4408-4423
0.002
1
6mer
5318-5339
0.002
0
6mer
5683-5705
0.002
0
6mer
6135-6151
0.001
1
6mer
6035-6060
0.001
1
FLJ31306
hsa-miR-20a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555707
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-170
0.042
Not Conserved
8mer
1376-1400
0.005
0
6mer
50-64
0.005
1
RP11-13N13.6
hsa-miR-20a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578583
Biotype: antisense
Gene id: ENSG00000265656
Gene Name: RP11-13N13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-197
0.053
1
RP1-91G5.3
hsa-miR-20a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411804
Biotype: antisense
Gene id: ENSG00000227415
Gene Name: RP1-91G5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-653
0.043
2
6mer
485-508
0.007
4
6mer
338-365
0.003
0
AC003973.4
hsa-miR-20a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-290
0.053
0
RP11-357F12.1
hsa-miR-20a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506656
Biotype: lincRNA
Gene id: ENSG00000248148
Gene Name: RP11-357F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-458
0.052
Not Conserved
RP13-216E22.5
hsa-miR-20a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603360
Biotype: sense_overlapping
Gene id: ENSG00000271199
Gene Name: RP13-216E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-255
0.052
0
FAM182B
hsa-miR-20a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026714.2
Biotype: sense
Gene id: NR_026714.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5378-5394
0.045
1
6mer
362-389
0.003
0
6mer
4473-4489
0.002
0
6mer
4463-4480
0.001
0
RP11-407B7.1
hsa-miR-20a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432154
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2054-2076
0.025
2
7mer
981-1002
0.012
0
7mer
876-895
0.009
0
6mer
765-787
0.003
2
6mer
2170-2193
0.002
1
LL22NC03-86G7.1
hsa-miR-20a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32504-32527
0.008
1
7mer
36075-36101
0.008
1
8mer
37483-37506
0.006
0
7mer
29275-29302
0.004
1
8mer
29873-29900
0.003
1
7mer
36460-36482
0.003
1
8mer
24954-24971
0.003
1
7mer
10562-10583
0.002
1
6mer
474-499
0.002
0
6mer
32893-32918
0.002
4
6mer
15812-15838
0.002
1
6mer
8573-8594
0.001
Not Conserved
6mer
22119-22139
0.001
1
6mer
12162-12188
0.001
1
6mer
7618-7645
0.001
Not Conserved
6mer
4353-4379
0.001
0
6mer
35158-35171
0.001
1
6mer
3819-3845
0.001
Not Conserved
XLOC_005501
hsa-miR-20a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1768-1792
0.052
1
RP11-347L18.1
hsa-miR-20a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434356
Biotype: lincRNA
Gene id: ENSG00000226739
Gene Name: RP11-347L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
304-326
0.051
0
UXT-AS1
hsa-miR-20a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000591832
Biotype: antisense
Gene id: ENSG00000267064
Gene Name: UXT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-49
0.051
7
MIR181A1HG
hsa-miR-20a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432296
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-887
0.043
3
6mer
876-897
0.008
5
RP11-643A5.2
hsa-miR-20a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558920
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-24
0.044
2
6mer
41-59
0.007
1
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