LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
MIR6080
hsa-miR-20a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578492
Biotype: processed_transcript
Gene id: ENSG00000215769
Gene Name: MIR6080
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-164
0.052
8
6mer
295-315
0.004
3
TPTEP1
hsa-miR-20a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1003-1016
0.056
1
RP11-145M9.4
hsa-miR-20a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595265
Biotype: lincRNA
Gene id: ENSG00000269728
Gene Name: RP11-145M9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
681-698
0.039
1
7mer
1618-1643
0.011
1
8mer
1901-1925
0.007
0
RP5-865N13.1
hsa-miR-20a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441459
Biotype: lincRNA
Gene id: ENSG00000236372
Gene Name: RP5-865N13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1879-1900
0.055
3
HAND2-AS1
hsa-miR-20a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2783-2809
0.023
7
8mer
4433-4453
0.019
8
7mer
2511-2531
0.009
5
6mer
243-263
0.004
1
6mer
2590-2609
0.001
4
RP11-171I2.2
hsa-miR-20a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603521
Biotype: antisense
Gene id: ENSG00000270574
Gene Name: RP11-171I2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1529-1541
0.025
6
7mer
233-252
0.015
6
7mer
711-725
0.008
3
6mer
1024-1032
0.004
6
6mer
1641-1660
0.004
5
RP11-424G14.1
hsa-miR-20a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000566193
Biotype: lincRNA
Gene id: ENSG00000260197
Gene Name: RP11-424G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-538
0.034
0
6mer
174-188
0.008
0
6mer
494-518
0.005
0
6mer
729-753
0.004
0
6mer
1088-1114
0.004
0
RP11-177F15.1
hsa-miR-20a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442726
Biotype: lincRNA
Gene id: ENSG00000231877
Gene Name: RP11-177F15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2310-2332
0.039
2
8mer
353-371
0.010
0
6mer
2527-2542
0.007
3
RP11-344E13.3
hsa-miR-20a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-392
0.055
0
RP11-680F8.1
hsa-miR-20a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-801
0.043
2
7mer
246-272
0.007
1
6mer
2092-2102
0.004
1
NAMA
hsa-miR-20a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604258
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1686-1698
0.055
8
LINC00293
hsa-miR-20a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1351-1376
0.038
1
7mer
536-554
0.017
0
XLOC_012724
hsa-miR-20a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026372
Biotype: transcript isomorph
Gene id: XLOC_012724
Gene Name: XLOC_012724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1301-1326
0.022
0
9mer
1072-1087
0.018
0
6mer
368-385
0.009
12
7mer
577-597
0.006
0
XLOC_007644
hsa-miR-20a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016268
Biotype: transcript isomorph
Gene id: XLOC_007644
Gene Name: XLOC_007644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1730-1742
0.055
1
RP11-190J1.3
hsa-miR-20a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458489
Biotype: lincRNA
Gene id: ENSG00000224817
Gene Name: RP11-190J1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-142
0.055
10
XLOC_010706
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3914-3935
0.021
0
6mer
3771-3791
0.016
1
6mer
26-44
0.009
0
6mer
2829-2844
0.003
0
6mer
2948-2963
0.002
Not Conserved
6mer
3312-3337
0.002
Not Conserved
LOC100130452
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_034036.1
Biotype: antisense
Gene id: NR_034036.1 (gene)
Gene Name: LOC100130452
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-351
0.051
1
6mer
394-409
0.004
0
NOP14-AS1
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507702
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
78-96
0.054
0
FIRRE
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427391
Biotype: lincRNA
Gene id: ENSG00000213468
Gene Name: FIRRE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-49
0.033
1
8mer
2729-2748
0.016
1
7mer
1362-1382
0.003
1
6mer
1005-1032
0.002
1
RP11-15E1.5
hsa-miR-20a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619851
Biotype: lincRNA
Gene id: ENSG00000274893
Gene Name: RP11-15E1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2165-2186
0.046
0
6mer
2002-2027
0.009
0
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