LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-272D12.2
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560337
Biotype: antisense
Gene id: ENSG00000259528
Gene Name: RP11-272D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-32
0.025
1
XLOC_006704
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014602
Biotype: transcript isomorph
Gene id: XLOC_006704
Gene Name: XLOC_006704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1162-1183
0.023
1
6mer
883-901
0.002
0
FAM66C
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454799
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1115-1133
0.013
1
6mer
610-620
0.012
1
LINC01010
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038218.1
Biotype: lincRNA
Gene id: NR_038218.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1239-1265
0.020
3
7mer
935-944
0.005
0
PRMT5-AS1
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424245
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1907-1923
0.017
1
7mer
82-99
0.005
Not Conserved
6mer
1912-1932
0.004
1
XLOC_002197
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005194
Biotype: transcript isomorph
Gene id: XLOC_002197
Gene Name: XLOC_002197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-234
0.025
0
AC012499.1
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412133
Biotype: antisense
Gene id: ENSG00000229941
Gene Name: AC012499.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-183
0.022
8
6mer
73-96
0.003
1
XLOC_001963
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-176
0.014
3
7mer
766-791
0.007
0
6mer
1549-1570
0.004
2
FAM226B
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026594.1
Biotype: sense
Gene id: NR_026594.1 (gene)
Gene Name: FAM226B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-664
0.025
3
XLOC_009393
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020049
Biotype: transcript isomorph
Gene id: XLOC_009393
Gene Name: XLOC_009393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-228
0.015
1
7mer
725-748
0.010
1
CTD-2555K7.2
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554857
Biotype: antisense
Gene id: ENSG00000258458
Gene Name: CTD-2555K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-401
0.011
7
7mer
14-31
0.010
1
6mer
401-426
0.004
Not Conserved
LINC01010
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038217.1
Biotype: lincRNA
Gene id: NR_038217.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1273-1299
0.020
3
7mer
969-978
0.005
0
LINC00277
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558922
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-266
0.025
0
XLOC_013167
hsa-miR-205-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026799
Biotype: transcript isomorph
Gene id: XLOC_013167
Gene Name: XLOC_013167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-479
0.022
2
6mer
377-392
0.003
1
XLOC_010996
hsa-miR-205-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023093
Biotype: transcript isomorph
Gene id: XLOC_010996
Gene Name: XLOC_010996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6856-6877
0.020
1
7mer
3033-3057
0.005
1
RP11-524N5.1
hsa-miR-205-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000619068
Biotype: lincRNA
Gene id: ENSG00000276778
Gene Name: RP11-524N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-509
0.008
1
7mer
546-563
0.007
0
6mer
3484-3508
0.006
3
6mer
3579-3599
0.004
2
AC137934.1
hsa-miR-205-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568739
Biotype: lincRNA
Gene id: ENSG00000260923
Gene Name: AC137934.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-504
0.020
0
7mer
209-228
0.004
Not Conserved
6mer
186-202
0.001
Not Conserved
RP11-831A10.2
hsa-miR-205-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524708
Biotype: lincRNA
Gene id: ENSG00000254863
Gene Name: RP11-831A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-324
0.025
3
XLOC_009605
hsa-miR-205-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019805
Biotype: transcript isomorph
Gene id: XLOC_009605
Gene Name: XLOC_009605
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-319
0.025
1
AC137934.1
hsa-miR-205-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569162
Biotype: lincRNA
Gene id: ENSG00000260923
Gene Name: AC137934.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-504
0.020
0
7mer
255-274
0.004
Not Conserved
6mer
232-248
0.001
Not Conserved
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