LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000160
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000918
Biotype: transcript isomorph
Gene id: XLOC_000160
Gene Name: XLOC_000160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-161
0.025
1
XLOC_002697
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006086
Biotype: transcript isomorph
Gene id: XLOC_002697
Gene Name: XLOC_002697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-80
0.025
6
RP11-770E5.2
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518620
Biotype: lincRNA
Gene id: ENSG00000253892
Gene Name: RP11-770E5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-395
0.019
Not Conserved
6mer
217-242
0.006
3
APELA
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_038825.1
Biotype: sense
Gene id: NR_038825.1 (gene)
Gene Name: APELA
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
524-546
0.012
0
7mer
1776-1792
0.009
1
6mer
1654-1679
0.004
2
RP11-379P15.1
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3481-3505
0.020
1
6mer
3306-3323
0.002
4
6mer
1565-1587
0.002
Not Conserved
6mer
1213-1235
0.001
1
AC016582.2
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592714
Biotype: lincRNA
Gene id: ENSG00000225868
Gene Name: AC016582.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-95
0.021
3
6mer
340-364
0.004
1
XLOC_004801
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010318
Biotype: transcript isomorph
Gene id: XLOC_004801
Gene Name: XLOC_004801
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-104
0.025
1
CALML3-AS1
hsa-miR-205-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000545372
Biotype: antisense
Gene id: ENSG00000205488
Gene Name: CALML3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-349
0.025
0
RP11-326C3.12
hsa-miR-205-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534483
Biotype: lincRNA
Gene id: ENSG00000255328
Gene Name: RP11-326C3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
599-616
0.025
0
AC104113.3
hsa-miR-205-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000457499
Biotype: antisense
Gene id: ENSG00000233847
Gene Name: AC104113.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-326
0.015
0
7mer
271-288
0.010
1
TMLHE-AS1
hsa-miR-205-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433624
Biotype: antisense
Gene id: ENSG00000224533
Gene Name: TMLHE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
794-819
0.013
1
6mer
377-403
0.005
1
6mer
153-173
0.004
1
6mer
451-472
0.004
1
RP11-384P7.7
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
970-997
0.012
1
9mer
1382-1402
0.006
0
6mer
3098-3116
0.004
1
6mer
1253-1270
0.002
0
CCDC26
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520048
Biotype: lincRNA
Gene id: ENSG00000229140
Gene Name: CCDC26
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
356-377
0.025
1
FAM215A
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_026770.1
Biotype: sense
Gene id: NR_026770.1 (gene)
Gene Name: FAM215A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
168-186
0.019
1
6mer
257-279
0.005
0
CTB-109A12.1
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519499
Biotype: sense_overlapping
Gene id: ENSG00000251405
Gene Name: CTB-109A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-291
0.023
0
6mer
526-552
0.002
1
LOC149134
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_015422.1
Biotype: lincRNA
Gene id: NR_015422.1 (gene)
Gene Name: LOC149134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-411
0.018
4
6mer
41-67
0.006
5
6mer
591-609
0.001
1
RMDN2-AS1
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598798
Biotype: antisense
Gene id: ENSG00000235848
Gene Name: RMDN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-51
0.025
1
RP11-298I3.4
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556503
Biotype: antisense
Gene id: ENSG00000258457
Gene Name: RP11-298I3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-743
0.025
8
PDXDC2P
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000531894
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3949-3972
0.010
4
8mer
1390-1410
0.007
Not Conserved
6mer
3579-3601
0.004
5
6mer
1810-1827
0.001
Not Conserved
7mer
1728-1741
0.001
Not Conserved
6mer
2347-2370
0.001
0
XLOC_006340
hsa-miR-205-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013678
Biotype: transcript isomorph
Gene id: XLOC_006340
Gene Name: XLOC_006340
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-295
0.025
1
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