LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-47I22.1
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556543
Biotype: antisense
Gene id: ENSG00000258926
Gene Name: RP11-47I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-543
0.025
1
XLOC_007533
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016140
Biotype: transcript isomorph
Gene id: XLOC_007533
Gene Name: XLOC_007533
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-74
0.014
0
7mer
88-109
0.011
1
CTD-2562J15.4
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591038
Biotype: antisense
Gene id: ENSG00000267033
Gene Name: CTD-2562J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-496
0.025
1
XLOC_007808
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016443
Biotype: transcript isomorph
Gene id: XLOC_007808
Gene Name: XLOC_007808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3601-3627
0.014
3
7mer
2100-2115
0.003
0
6mer
941-960
0.003
2
6mer
2583-2608
0.002
3
6mer
1421-1439
0.002
1
6mer
3028-3050
0.001
1
6mer
5431-5439
0.001
0
RP3-395M20.8
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449660
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-254
0.020
0
6mer
1514-1538
0.003
1
6mer
551-572
0.002
0
LINC01341
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426089
Biotype: retained_intron
Gene id: ENSG00000227953
Gene Name: LINC01341
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
919-934
0.011
4
7mer
1817-1844
0.009
0
6mer
564-590
0.004
5
6mer
1114-1132
0.001
1
ADAM20P1
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556964
Biotype: lincRNA
Gene id: ENSG00000259158
Gene Name: ADAM20P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2768-2787
0.019
0
6mer
2713-2737
0.004
0
6mer
1807-1831
0.002
2
RP11-115J16.2
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522765
Biotype: lincRNA
Gene id: ENSG00000254237
Gene Name: RP11-115J16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-229
0.025
0
RP11-210M15.1
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000548231
Biotype: antisense
Gene id: ENSG00000258010
Gene Name: RP11-210M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
472-496
0.015
1
6mer
169-193
0.004
1
6mer
217-233
0.003
Not Conserved
7mer
742-760
0.003
0
XLOC_011949
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024661
Biotype: transcript isomorph
Gene id: XLOC_011949
Gene Name: XLOC_011949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-286
0.025
0
RP11-710F7.3
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513220
Biotype: antisense
Gene id: ENSG00000249635
Gene Name: RP11-710F7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-149
0.022
1
6mer
2763-2789
0.002
0
6mer
1291-1315
0.002
1
RP11-173P15.9
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611056
Biotype: lincRNA
Gene id: ENSG00000277423
Gene Name: RP11-173P15.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-147
0.025
0
MIR7515HG
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586753
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-56
0.025
6
RP11-875H7.2
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465946
Biotype: lincRNA
Gene id: ENSG00000242775
Gene Name: RP11-875H7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-81
0.025
1
RP1-27K12.2
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506206
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
467-490
0.013
6
7mer
297-315
0.012
1
RP3-399L15.3
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000523087
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-240
0.017
2
6mer
477-490
0.005
1
6mer
324-342
0.003
0
NR2F2-AS1
hsa-miR-205-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560395
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-333
0.013
0
8mer
241-264
0.008
2
6mer
176-199
0.004
1
CYP1B1-AS1
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593090
Biotype: antisense
Gene id: ENSG00000232973
Gene Name: CYP1B1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-306
0.016
1
7mer
261-280
0.005
1
6mer
181-195
0.004
2
RP11-565A3.2
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514767
Biotype: lincRNA
Gene id: ENSG00000250590
Gene Name: RP11-565A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-405
0.025
1
LINC00943
hsa-miR-205-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000345111
Biotype: lincRNA
Gene id: ENSG00000189238
Gene Name: LINC00943
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1540-1560
0.021
0
6mer
638-665
0.004
2
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