LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008501
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017835
Biotype: transcript isomorph
Gene id: XLOC_008501
Gene Name: XLOC_008501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
234-260
0.025
Not Conserved
RP3-393E18.2
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430078
Biotype: lincRNA
Gene id: ENSG00000237927
Gene Name: RP3-393E18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-357
0.012
2
7mer
1074-1099
0.006
1
6mer
1864-1882
0.004
0
7mer
720-741
0.003
0
6mer
656-670
0.001
0
RP1-149C7.1
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564251
Biotype: lincRNA
Gene id: ENSG00000261038
Gene Name: RP1-149C7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-698
0.018
0
6mer
471-492
0.003
1
6mer
708-729
0.003
0
RP11-403I13.5
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443018
Biotype: lincRNA
Gene id: ENSG00000232721
Gene Name: RP11-403I13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2308-2326
0.023
0
6mer
1630-1648
0.003
1
NCOA7-AS1
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429007
Biotype: antisense
Gene id: ENSG00000232131
Gene Name: NCOA7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-334
0.025
1
AC004076.5
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620532
Biotype: antisense
Gene id: ENSG00000276449
Gene Name: AC004076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2922-2946
0.025
0
LINC01330
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490897
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-79
0.017
4
6mer
328-354
0.008
7
PLCE1-AS1
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440198
Biotype: antisense
Gene id: ENSG00000268894
Gene Name: PLCE1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
355-369
0.019
1
6mer
254-274
0.007
6
XLOC_009983
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020678
Biotype: transcript isomorph
Gene id: XLOC_009983
Gene Name: XLOC_009983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-160
0.023
3
6mer
458-478
0.002
1
LINC00969
hsa-miR-205-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000618708
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-527
0.016
0
7mer
453-472
0.004
Not Conserved
6mer
40-53
0.003
0
6mer
463-483
0.002
0
LINC01378
hsa-miR-205-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000437514
Biotype: lincRNA
Gene id: ENSG00000236922
Gene Name: LINC01378
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-317
0.021
1
6mer
477-497
0.004
0
AC018359.1
hsa-miR-205-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000415991
Biotype: lincRNA
Gene id: ENSG00000226320
Gene Name: AC018359.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-524
0.013
0
6mer
25-39
0.005
2
6mer
464-487
0.005
2
6mer
249-273
0.003
0
AC011747.4
hsa-miR-205-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454224
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6904-6927
0.007
2
7mer
5421-5446
0.007
1
6mer
8657-8680
0.005
3
7mer
3843-3863
0.004
0
6mer
2065-2074
0.002
0
6mer
4304-4329
0.001
2
XLOC_012676
hsa-miR-205-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026329
Biotype: transcript isomorph
Gene id: XLOC_012676
Gene Name: XLOC_012676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-317
0.025
0
RP11-382J12.1
hsa-miR-205-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499227
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2905-2930
0.018
2
6mer
764-776
0.003
1
6mer
451-467
0.003
1
6mer
1785-1811
0.001
0
XLOC_006766
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014668
Biotype: transcript isomorph
Gene id: XLOC_006766
Gene Name: XLOC_006766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-248
0.025
1
LINC01010
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440090
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1211-1237
0.020
3
7mer
907-916
0.005
0
XLOC_010706
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3026-3044
0.018
0
6mer
3449-3470
0.004
0
6mer
3403-3428
0.003
0
CTD-2313F11.1
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000371487
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
648-661
0.023
1
6mer
224-249
0.003
1
LINC00671
hsa-miR-205-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000301683
Biotype: lincRNA
Gene id: ENSG00000213373
Gene Name: LINC00671
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-630
0.007
1
7mer
321-343
0.007
1
7mer
222-244
0.006
0
6mer
1292-1318
0.002
1
6mer
1284-1306
0.002
2
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