LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012542
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025723
Biotype: transcript isomorph
Gene id: XLOC_012542
Gene Name: XLOC_012542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-456
0.011
1
7mer
236-261
0.005
0
6mer
1438-1454
0.003
1
7mer
1123-1140
0.002
1
6mer
1830-1853
0.002
5
6mer
196-214
0.002
2
RP11-583F2.7
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577423
Biotype: processed_transcript
Gene id: ENSG00000280299
Gene Name: RP11-583F2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-143
0.026
10
CDKN2B-AS1
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422420
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-111
0.026
2
LINC01010
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038216.1
Biotype: lincRNA
Gene id: NR_038216.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1482-1508
0.020
3
7mer
1178-1187
0.005
0
XLOC_005862
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011141
Biotype: transcript isomorph
Gene id: XLOC_005862
Gene Name: XLOC_005862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2306-2324
0.011
0
7mer
289-312
0.006
0
6mer
132-156
0.004
2
6mer
664-680
0.002
0
6mer
1117-1142
0.002
2
MEG9
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000429368
Biotype: lincRNA
Gene id: ENSG00000223403
Gene Name: MEG9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2491-2513
0.023
1
6mer
1795-1821
0.002
1
C3orf65
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000296270
Biotype: antisense
Gene id: ENSG00000163915
Gene Name: C3orf65
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1193-1202
0.017
4
8mer+wobble
448-471
0.004
0
6mer
1633-1654
0.003
1
6mer
1625-1646
0.001
0
XLOC_005517
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011401
Biotype: transcript isomorph
Gene id: XLOC_005517
Gene Name: XLOC_005517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-87
0.025
4
LINC01435
hsa-miR-205-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595603
Biotype: lincRNA
Gene id: ENSG00000229981
Gene Name: LINC01435
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-490
0.021
1
6mer
15-32
0.004
1
RP1-225E12.3
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000617538
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
546-564
0.025
11
SNHG5
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000624128
Biotype: lincRNA
Gene id: ENSG00000203875
Gene Name: SNHG5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-523
0.025
1
SNHG5
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000623650
Biotype: lincRNA
Gene id: ENSG00000203875
Gene Name: SNHG5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-732
0.025
1
RP11-524H19.2
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425089
Biotype: antisense
Gene id: ENSG00000224984
Gene Name: RP11-524H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-159
0.025
0
XLOC_002766
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006158
Biotype: transcript isomorph
Gene id: XLOC_002766
Gene Name: XLOC_002766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-160
0.017
2
6mer
455-478
0.005
0
6mer
343-364
0.003
0
MIR4435-1HG
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015395.1
Biotype: lincRNA
Gene id: NR_015395.1 (gene)
Gene Name: MIR4435-1HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
773-791
0.025
2
LOC100506022
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_104622.1
Biotype: lincRNA
Gene id: NR_104622.1 (gene)
Gene Name: LOC100506022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1008
0.023
3
6mer
769-787
0.003
1
AC003991.3
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000600908
Biotype: antisense
Gene id: ENSG00000228113
Gene Name: AC003991.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-431
0.025
4
CTC-546K23.1
hsa-miR-205-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000594690
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-526
0.021
1
6mer
187-205
0.004
1
ZNF503-AS1
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000533822
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-95
0.025
1
LINC00326
hsa-miR-205-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434443
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-81
0.023
2
6mer
615-636
0.003
0
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