LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
SNHG14
hsa-miR-205-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557108
Biotype: retained_intron
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-315
0.017
1
6mer
250-265
0.008
3
6mer
1795-1821
0.001
2
RP11-295H24.5
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619930
Biotype: sense_intronic
Gene id: ENSG00000276593
Gene Name: RP11-295H24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-120
0.021
3
6mer
201-225
0.005
3
ZNF561-AS1
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591056
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
10-34
0.026
1
RP11-524P6.1
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000437466
Biotype: lincRNA
Gene id: ENSG00000233103
Gene Name: RP11-524P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-243
0.026
4
RP11-21B23.3
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567899
Biotype: lincRNA
Gene id: ENSG00000260573
Gene Name: RP11-21B23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-283
0.026
2
CTC-248O19.1
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517634
Biotype: antisense
Gene id: ENSG00000253653
Gene Name: CTC-248O19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-398
0.010
1
7mer
538-555
0.009
0
6mer
174-188
0.004
1
6mer
335-361
0.003
1
RP11-509E10.1
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000549303
Biotype: sense_intronic
Gene id: ENSG00000257180
Gene Name: RP11-509E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-162
0.013
1
8mer
134-149
0.013
0
RP11-440G9.1
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027311.1
Biotype: lincRNA
Gene id: NR_027311.1 (gene)
Gene Name: RP11-440G9.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2087-2105
0.012
0
7mer
289-312
0.006
0
6mer
132-156
0.004
2
6mer
664-680
0.002
0
6mer
1117-1142
0.002
2
AC012360.6
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415627
Biotype: antisense
Gene id: ENSG00000238273
Gene Name: AC012360.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
339-357
0.020
0
6mer
123-142
0.004
3
6mer
517-535
0.002
0
RP11-159D12.2
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585065
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
415-440
0.009
1
7mer
40-54
0.008
3
7mer
1018-1031
0.005
2
7mer
1947-1971
0.002
0
6mer
1141-1156
0.002
1
RP11-674N23.4
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609424
Biotype: sense_intronic
Gene id: ENSG00000272788
Gene Name: RP11-674N23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-390
0.026
1
RP11-386G11.10
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547387
Biotype: antisense
Gene id: ENSG00000258017
Gene Name: RP11-386G11.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-701
0.026
12
XLOC_000294
hsa-miR-205-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7169-7192
0.018
3
7mer
3080-3102
0.006
1
6mer
7942-7968
0.002
1
6mer
3244-3261
0.001
1
SPG20OS
hsa-miR-205-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000379848
Biotype: antisense
Gene id: ENSG00000120664
Gene Name: SPG20OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-170
0.026
1
LINC01279
hsa-miR-205-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-157
0.024
1
6mer
461-482
0.002
3
LINC00905
hsa-miR-205-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588117
Biotype: lincRNA
Gene id: ENSG00000167459
Gene Name: LINC00905
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1570-1582
0.012
1
6mer
1486-1497
0.005
1
7mer
985-1010
0.005
0
6mer
219-241
0.002
1
6mer
214-233
0.002
1
OSER1-AS1
hsa-miR-205-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442383
Biotype: lincRNA
Gene id: ENSG00000223891
Gene Name: OSER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-420
0.015
2
7mer
428-446
0.006
1
6mer
360-380
0.003
2
6mer
524-546
0.002
1
AC144835.1
hsa-miR-205-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554798
Biotype: lincRNA
Gene id: ENSG00000258483
Gene Name: AC144835.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
917-931
0.019
1
7mer
465-481
0.005
1
6mer
15-38
0.002
0
XLOC_007155
hsa-miR-205-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015093
Biotype: transcript isomorph
Gene id: XLOC_007155
Gene Name: XLOC_007155
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1218-1233
0.012
1
7mer
529-546
0.008
0
6mer
51-74
0.004
1
7mer
1075-1098
0.002
0
RP11-317O24.1
hsa-miR-205-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512599
Biotype: lincRNA
Gene id: ENSG00000249405
Gene Name: RP11-317O24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-685
0.020
0
7mer
491-510
0.006
0
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