LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-383M4.6
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585776
Biotype: lincRNA
Gene id: ENSG00000267559
Gene Name: RP11-383M4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1170-1189
0.013
1
8mer
1073-1092
0.011
1
6mer
1656-1680
0.003
1
RP11-406A9.2
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555798
Biotype: lincRNA
Gene id: ENSG00000258743
Gene Name: RP11-406A9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-128
0.019
0
6mer
115-119
0.008
1
RP11-494M8.4
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527847
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2129-2149
0.024
3
6mer
1753-1779
0.002
1
XLOC_004335
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009378
Biotype: transcript isomorph
Gene id: XLOC_004335
Gene Name: XLOC_004335
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-170
0.026
2
ALKBH3-AS1
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499194
Biotype: antisense
Gene id: ENSG00000244926
Gene Name: ALKBH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1694-1713
0.026
1
RP11-546M21.6
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585899
Biotype: antisense
Gene id: ENSG00000267638
Gene Name: RP11-546M21.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-154
0.026
1
LINC01029
hsa-miR-205-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583106
Biotype: lincRNA
Gene id: ENSG00000265843
Gene Name: LINC01029
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-128
0.022
0
6mer
1127-1138
0.003
0
6mer
1007-1027
0.002
0
LINC00086
hsa-miR-205-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000417443
Biotype: lincRNA
Gene id: ENSG00000178947
Gene Name: LINC00086
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4878-4898
0.013
1
8mer
492-510
0.007
1
6mer
716-740
0.001
0
6mer
1535-1559
0.001
1
6mer
986-1005
0.001
Not Conserved
6mer
879-902
0.001
0
6mer
449-463
0.001
0
RP11-362F19.1
hsa-miR-205-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506645
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-402
0.026
0
RP5-991O23.1
hsa-miR-205-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517807
Biotype: lincRNA
Gene id: ENSG00000253510
Gene Name: RP5-991O23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-223
0.021
0
7mer
1774-1791
0.003
Not Conserved
6mer
1965-1984
0.002
0
CTD-2013N24.2
hsa-miR-205-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596659
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-571
0.021
1
6mer
637-663
0.006
1
CALML3-AS1
hsa-miR-205-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000542093
Biotype: antisense
Gene id: ENSG00000205488
Gene Name: CALML3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-437
0.026
0
RP11-1008C21.1
hsa-miR-205-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559992
Biotype: lincRNA
Gene id: ENSG00000259225
Gene Name: RP11-1008C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-315
0.022
1
6mer
423-439
0.005
1
AC069257.8
hsa-miR-205-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425275
Biotype: antisense
Gene id: ENSG00000228028
Gene Name: AC069257.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
167-191
0.023
0
6mer
174-197
0.004
0
XLOC_011716
hsa-miR-205-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024391
Biotype: transcript isomorph
Gene id: XLOC_011716
Gene Name: XLOC_011716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-312
0.026
2
RP11-236J17.6
hsa-miR-205-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526646
Biotype: antisense
Gene id: ENSG00000254921
Gene Name: RP11-236J17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
138-163
0.022
0
6mer
19-44
0.004
1
XLOC_004625
hsa-miR-205-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010162
Biotype: transcript isomorph
Gene id: XLOC_004625
Gene Name: XLOC_004625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-155
0.026
1
XLOC_010468
hsa-miR-205-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021869
Biotype: transcript isomorph
Gene id: XLOC_010468
Gene Name: XLOC_010468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-373
0.016
1
6mer
176-188
0.004
0
6mer
458-473
0.003
1
6mer
278-290
0.003
0
HSD52
hsa-miR-205-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000625069
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
792-804
0.023
5
6mer
920-941
0.003
1
TTTY10
hsa-miR-205-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
928-943
0.026
0
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