LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
LINC00485
hsa-miR-205-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_033855.1
Biotype: lincRNA
Gene id: NR_033855.1 (gene)
Gene Name: LINC00485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-343
0.023
4
6mer
3647-3670
0.002
1
6mer
1994-2012
0.001
2
6mer
1905-1921
0.001
0
FTX
hsa-miR-205-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603672
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
744-765
0.027
2
AC009518.4
hsa-miR-205-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452219
Biotype: lincRNA
Gene id: ENSG00000224865
Gene Name: AC009518.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
172-198
0.027
Not Conserved
AC009518.4
hsa-miR-205-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415393
Biotype: lincRNA
Gene id: ENSG00000224865
Gene Name: AC009518.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
906-932
0.023
Not Conserved
6mer
290-308
0.003
0
TMX2-CTNND1
hsa-miR-205-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
589-611
0.019
8
7mer
4769-4793
0.003
1
6mer
5598-5625
0.002
2
6mer
2246-2267
0.002
6
6mer
4194-4212
0.001
0
XLOC_012303
hsa-miR-205-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025482
Biotype: transcript isomorph
Gene id: XLOC_012303
Gene Name: XLOC_012303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
611-628
0.015
1
7mer
206-223
0.010
1
6mer
774-793
0.002
1
XLOC_000835
hsa-miR-205-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001496
Biotype: transcript isomorph
Gene id: XLOC_000835
Gene Name: XLOC_000835
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-141
0.016
1
7mer
190-216
0.007
0
6mer
923-943
0.003
2
RP11-308N19.1
hsa-miR-205-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425709
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-337
0.024
6
6mer
942-962
0.003
1
RP11-513I15.6
hsa-miR-205-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-424
0.010
5
7mer
4892-4918
0.010
2
6mer
394-413
0.002
1
6mer
2060-2087
0.002
1
6mer
3812-3832
0.001
0
6mer
5000-5026
0.001
1
6mer
3834-3856
0.001
3
6mer
2974-2994
0.001
1
CTD-2015G9.2
hsa-miR-205-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562064
Biotype: lincRNA
Gene id: ENSG00000261175
Gene Name: CTD-2015G9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-118
0.019
0
7mer
290-308
0.005
0
6mer
222-248
0.002
Not Conserved
XLOC_002026
hsa-miR-205-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005117
Biotype: transcript isomorph
Gene id: XLOC_002026
Gene Name: XLOC_002026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-137
0.027
1
XLOC_008693
hsa-miR-205-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018409
Biotype: transcript isomorph
Gene id: XLOC_008693
Gene Name: XLOC_008693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-43
0.015
0
7mer
249-269
0.007
1
6mer
592-619
0.003
1
6mer
732-751
0.002
1
XLOC_002541
hsa-miR-205-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004627
Biotype: transcript isomorph
Gene id: XLOC_002541
Gene Name: XLOC_002541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-50
0.027
2
RP11-27K13.3
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445523
Biotype: antisense
Gene id: ENSG00000236137
Gene Name: RP11-27K13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1233-1259
0.020
2
6mer
418-442
0.003
4
6mer
511-535
0.003
2
RP11-13N12.1
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521411
Biotype: lincRNA
Gene id: ENSG00000253496
Gene Name: RP11-13N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-258
0.018
4
7mer
453-472
0.008
Not Conserved
RP11-101E7.2
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568410
Biotype: antisense
Gene id: ENSG00000260277
Gene Name: RP11-101E7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-368
0.027
3
RP11-1299A16.3
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569927
Biotype: antisense
Gene id: ENSG00000260641
Gene Name: RP11-1299A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-328
0.005
1
6mer
4988-5010
0.004
5
6mer
212-238
0.004
1
6mer
564-581
0.003
3
6mer
778-801
0.002
2
6mer
3409-3425
0.002
2
6mer
4404-4422
0.002
0
6mer
2139-2150
0.001
Not Conserved
6mer
785-807
0.001
3
6mer
4461-4481
0.001
4
6mer
855-874
0.001
1
LINC00467
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448567
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-328
0.023
1
6mer
110-131
0.003
Not Conserved
RP11-544A12.4
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417798
Biotype: antisense
Gene id: ENSG00000236986
Gene Name: RP11-544A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-241
0.016
0
7mer
18-42
0.011
4
RP11-506E9.3
hsa-miR-205-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566420
Biotype: sense_overlapping
Gene id: ENSG00000261745
Gene Name: RP11-506E9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-20
0.027
1
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