LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
DYX1C1-CCPG1
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568310
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-413
0.015
4
6mer
1159-1182
0.013
11
XLOC_008200
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017354
Biotype: transcript isomorph
Gene id: XLOC_008200
Gene Name: XLOC_008200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-359
0.021
1
6mer
272-287
0.003
1
6mer
563-576
0.003
1
CYP1B1-AS1
hsa-miR-205-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610172
Biotype: antisense
Gene id: ENSG00000232973
Gene Name: CYP1B1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-148
0.027
1
RP11-430C1.1
hsa-miR-205-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568279
Biotype: lincRNA
Gene id: ENSG00000261807
Gene Name: RP11-430C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3874-3898
0.011
1
8mer
485-511
0.010
1
6mer
4542-4556
0.002
1
6mer
3142-3165
0.002
1
6mer
4698-4713
0.001
1
6mer
1095-1110
0.001
0
6mer
1101-1126
0.001
1
KRTAP5-AS1
hsa-miR-205-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532922
Biotype: antisense
Gene id: ENSG00000233930
Gene Name: KRTAP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-139
0.020
3
6mer
216-235
0.005
3
6mer
88-112
0.002
1
XLOC_008033
hsa-miR-205-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017441
Biotype: transcript isomorph
Gene id: XLOC_008033
Gene Name: XLOC_008033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3255-3279
0.021
0
7mer
1076-1100
0.004
Not Conserved
6mer
2157-2179
0.003
0
RP11-333A23.3
hsa-miR-205-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521051
Biotype: lincRNA
Gene id: ENSG00000253143
Gene Name: RP11-333A23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-200
0.017
1
8mer
149-175
0.010
Not Conserved
XLOC_004269
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009233
Biotype: transcript isomorph
Gene id: XLOC_004269
Gene Name: XLOC_004269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1840-1867
0.018
1
6mer
520-543
0.003
1
6mer
771-794
0.003
0
6mer
541-567
0.002
2
6mer
537-558
0.001
1
LOC648987
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034086.1
Biotype: lincRNA
Gene id: NR_034086.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-163
0.027
0
GAS5
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422008
Biotype: retained_intron
Gene id: ENSG00000234741
Gene Name: GAS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-194
0.022
Not Conserved
6mer
75-96
0.005
0
XLOC_008683
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018398
Biotype: transcript isomorph
Gene id: XLOC_008683
Gene Name: XLOC_008683
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-255
0.027
2
RP11-352D13.6
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563004
Biotype: antisense
Gene id: ENSG00000261634
Gene Name: RP11-352D13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1901-1917
0.008
2
7mer
1973-1998
0.007
1
6mer
2223-2249
0.005
3
6mer
513-532
0.003
2
6mer
1217-1238
0.003
3
6mer
405-422
0.002
0
XLOC_005452
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011943
Biotype: transcript isomorph
Gene id: XLOC_005452
Gene Name: XLOC_005452
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-500
0.024
0
6mer
89-112
0.003
0
RP11-588H23.3
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549460
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-375
0.024
0
6mer
150-170
0.003
Not Conserved
RP11-104N10.2
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611189
Biotype: sense_intronic
Gene id: ENSG00000274627
Gene Name: RP11-104N10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5021-5038
0.011
1
6mer
308-332
0.003
0
6mer
1546-1565
0.002
1
6mer
2507-2521
0.002
0
6mer
437-454
0.001
Not Conserved
6mer
3418-3444
0.001
0
6mer
544-571
0.001
0
6mer
505-532
0.001
Not Conserved
6mer
3519-3534
0.001
1
6mer
1597-1622
0.001
0
6mer
1717-1736
0.001
0
6mer
1972-1991
0.001
0
6mer
1769-1794
0.001
0
6mer
1654-1679
0.001
0
6mer
1827-1852
0.001
0
RP11-201A3.1
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569873
Biotype: lincRNA
Gene id: ENSG00000261182
Gene Name: RP11-201A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-56
0.027
0
RP11-731D1.4
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603264
Biotype: lincRNA
Gene id: ENSG00000270265
Gene Name: RP11-731D1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-378
0.022
1
6mer
388-409
0.005
1
LINC00485
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547179
Biotype: lincRNA
Gene id: ENSG00000258169
Gene Name: LINC00485
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-346
0.023
4
6mer
3650-3673
0.002
1
6mer
1997-2015
0.001
2
6mer
1908-1924
0.001
0
BACE2-IT1
hsa-miR-205-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433378
Biotype: antisense
Gene id: ENSG00000224388
Gene Name: BACE2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-39
0.027
0
RP11-733D4.1
hsa-miR-205-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456722
Biotype: lincRNA
Gene id: ENSG00000234580
Gene Name: RP11-733D4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-718
0.019
0
6mer
640-667
0.005
4
6mer
151-173
0.002
1
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