LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
ASAP1-IT1
hsa-miR-205-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_002765.2
Biotype: sense
Gene id: NR_002765.2 (gene)
Gene Name: ASAP1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-142
0.027
0
ZNF561-AS1
hsa-miR-205-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588765
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
26-50
0.027
1
LINC00701
hsa-miR-205-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418295
Biotype: lincRNA
Gene id: ENSG00000234556
Gene Name: LINC00701
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-82
0.025
0
6mer
499-523
0.003
0
RP11-403P17.2
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568430
Biotype: antisense
Gene id: ENSG00000260650
Gene Name: RP11-403P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-203
0.027
6
RP11-27K13.3
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421254
Biotype: antisense
Gene id: ENSG00000236137
Gene Name: RP11-27K13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-444
0.027
2
RP11-756P10.2
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514297
Biotype: lincRNA
Gene id: ENSG00000250626
Gene Name: RP11-756P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1656-1673
0.016
1
7mer
1631-1649
0.007
0
6mer
1295-1306
0.002
1
6mer
1364-1384
0.002
1
RP11-646J21.4
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527270
Biotype: lincRNA
Gene id: ENSG00000254619
Gene Name: RP11-646J21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-146
0.027
1
LINC00467
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026761.2
Biotype: lincRNA
Gene id: NR_026761.2 (gene)
Gene Name: LINC00467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-253
0.022
1
6mer
482-501
0.006
1
XLOC_013012
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
652-674
0.027
1
XLOC_010238
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020225
Biotype: transcript isomorph
Gene id: XLOC_010238
Gene Name: XLOC_010238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-389
0.024
1
6mer
2829-2851
0.003
1
RP11-982M15.8
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000564585
Biotype: lincRNA
Gene id: ENSG00000260792
Gene Name: RP11-982M15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-205
0.018
1
6mer
3755-3771
0.007
1
6mer
1173-1195
0.001
0
P2RX5-TAX1BP3
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037928.1
Biotype: sense
Gene id: NR_037928.1 (gene)
Gene Name: P2RX5-TAX1BP3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5520-5544
0.019
1
7mer
1043-1059
0.004
3
7mer
5337-5362
0.002
2
6mer
3997-4021
0.002
1
RP1-39G22.7
hsa-miR-205-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567508
Biotype: antisense
Gene id: ENSG00000259943
Gene Name: RP1-39G22.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-542
0.022
1
6mer
1270-1296
0.005
4
HIPK1-AS1
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450706
Biotype: antisense
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-299
0.019
0
6mer
1836-1848
0.005
1
7mer
857-879
0.004
2
XLOC_013496
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028138
Biotype: transcript isomorph
Gene id: XLOC_013496
Gene Name: XLOC_013496
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-519
0.027
1
AC123886.2
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458252
Biotype: antisense
Gene id: ENSG00000231536
Gene Name: AC123886.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-671
0.027
1
AC083884.8
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000601921
Biotype: antisense
Gene id: ENSG00000232729
Gene Name: AC083884.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-710
0.027
1
RC3H1-IT1
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421851
Biotype: sense_intronic
Gene id: ENSG00000236535
Gene Name: RC3H1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-90
0.027
1
AF064858.8
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000417335
Biotype: lincRNA
Gene id: ENSG00000235888
Gene Name: AF064858.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1347-1370
0.024
0
6mer
1056-1083
0.003
1
XLOC_000678
hsa-miR-205-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000075
Biotype: transcript isomorph
Gene id: XLOC_000678
Gene Name: XLOC_000678
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-254
0.018
0
6mer
2006-2033
0.004
1
6mer
532-556
0.003
0
6mer
1804-1828
0.001
1
6mer
841-862
0.001
0
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