LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000118
hsa-miR-205-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000879
Biotype: transcript isomorph
Gene id: XLOC_000118
Gene Name: XLOC_000118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-702
0.028
0
RP11-466A19.1
hsa-miR-205-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581360
Biotype: antisense
Gene id: ENSG00000266718
Gene Name: RP11-466A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
914-930
0.017
0
7mer
1793-1814
0.008
0
6mer
1844-1856
0.002
2
RP4-781K5.4
hsa-miR-205-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417805
Biotype: lincRNA
Gene id: ENSG00000228044
Gene Name: RP4-781K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-132
0.021
2
6mer
551-567
0.007
4
XLOC_010268
hsa-miR-205-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021007
Biotype: transcript isomorph
Gene id: XLOC_010268
Gene Name: XLOC_010268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-154
0.028
1
AC159540.2
hsa-miR-205-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000618807
Biotype: lincRNA
Gene id: ENSG00000278766
Gene Name: AC159540.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-202
0.027
1
C20orf166-AS1
hsa-miR-205-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000436101
Biotype: antisense
Gene id: ENSG00000174403
Gene Name: C20orf166-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
348-366
0.026
1
6mer
91-110
0.002
1
RP11-100N20.1
hsa-miR-205-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512502
Biotype: antisense
Gene id: ENSG00000251059
Gene Name: RP11-100N20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
126-149
0.022
Not Conserved
6mer
620-645
0.005
1
AC010226.4
hsa-miR-205-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109874.1
Biotype: antisense
Gene id: NR_109874.1 (gene)
Gene Name: AC010226.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-461
0.027
2
RP11-232C2.3
hsa-miR-205-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-530
0.027
2
RP11-164P12.3
hsa-miR-205-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514269
Biotype: antisense
Gene id: ENSG00000251455
Gene Name: RP11-164P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1943-1958
0.008
Not Conserved
7mer
2382-2403
0.006
0
7mer
1454-1466
0.006
0
6mer
639-663
0.004
2
6mer
2336-2356
0.002
Not Conserved
6mer
702-726
0.001
2
LINC01020
hsa-miR-205-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508201
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1558-1585
0.018
1
6mer
714-737
0.003
0
6mer
508-531
0.002
1
6mer
529-555
0.002
2
6mer
525-546
0.002
1
LINC00342
hsa-miR-205-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448494
Biotype: lincRNA
Gene id: ENSG00000232931
Gene Name: LINC00342
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
586-603
0.018
1
6mer
901-922
0.004
1
6mer
834-858
0.002
0
6mer
1530-1557
0.002
0
RP11-65M17.3
hsa-miR-205-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529827
Biotype: lincRNA
Gene id: ENSG00000254968
Gene Name: RP11-65M17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-406
0.027
4
XLOC_000371
hsa-miR-205-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001130
Biotype: transcript isomorph
Gene id: XLOC_000371
Gene Name: XLOC_000371
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
18-40
0.027
Not Conserved
RP11-94H18.1
hsa-miR-205-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507496
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1703-1716
0.021
0
6mer
1108-1121
0.005
5
6mer
1403-1429
0.002
0
CTB-111H14.1
hsa-miR-205-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000592441
Biotype: sense_overlapping
Gene id: ENSG00000243797
Gene Name: CTB-111H14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-178
0.027
1
PLCE1-AS1
hsa-miR-205-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611247
Biotype: antisense
Gene id: ENSG00000268894
Gene Name: PLCE1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
449-463
0.020
1
6mer
348-368
0.007
6
XLOC_008245
hsa-miR-205-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017380
Biotype: transcript isomorph
Gene id: XLOC_008245
Gene Name: XLOC_008245
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-352
0.019
0
6mer
298-319
0.008
1
XLOC_008524
hsa-miR-205-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018764
Biotype: transcript isomorph
Gene id: XLOC_008524
Gene Name: XLOC_008524
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27-52
0.023
1
6mer
9-28
0.005
1
RP11-133L19.1
hsa-miR-205-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558587
Biotype: antisense
Gene id: ENSG00000259620
Gene Name: RP11-133L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-237
0.017
1
7mer
109-135
0.011
1
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