LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
AC011294.3
hsa-miR-205-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000487094
Biotype: lincRNA
Gene id: ENSG00000233539
Gene Name: AC011294.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-305
0.028
2
RP11-151A6.4
hsa-miR-205-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454752
Biotype: sense_intronic
Gene id: ENSG00000224356
Gene Name: RP11-151A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
836-855
0.016
0
7mer
1954-1978
0.006
0
8mer+wobble
217-239
0.004
1
6mer
579-601
0.002
0
MIR4313
hsa-miR-205-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2297-2314
0.009
1
6mer
2655-2679
0.008
1
7mer
875-893
0.007
0
6mer
542-558
0.004
0
LINC00670
hsa-miR-205-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000313495
Biotype: lincRNA
Gene id: ENSG00000179136
Gene Name: LINC00670
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1404-1424
0.010
0
7mer
2198-2223
0.009
0
7mer
509-535
0.008
2
6mer
829-851
0.002
1
RP11-39M21.1
hsa-miR-205-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560876
Biotype: antisense
Gene id: ENSG00000259481
Gene Name: RP11-39M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-36
0.028
2
LINC00351
hsa-miR-205-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046989.1
Biotype: lincRNA
Gene id: NR_046989.1 (gene)
Gene Name: LINC00351
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-339
0.013
Not Conserved
7mer
712-733
0.012
3
6mer
561-581
0.004
1
AC016735.2
hsa-miR-205-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422351
Biotype: lincRNA
Gene id: ENSG00000231826
Gene Name: AC016735.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-223
0.024
1
6mer
75-101
0.002
0
6mer
233-260
0.002
0
AC083843.1
hsa-miR-205-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000568248
Biotype: lincRNA
Gene id: ENSG00000259820
Gene Name: AC083843.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4121-4134
0.012
Not Conserved
7mer
2090-2112
0.007
4
7mer
2906-2932
0.005
2
6mer
5332-5350
0.002
0
6mer
4523-4542
0.001
1
RP11-538P18.2
hsa-miR-205-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475981
Biotype: antisense
Gene id: ENSG00000243150
Gene Name: RP11-538P18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1267-1288
0.022
4
6mer
730-750
0.003
1
6mer
591-615
0.003
0
CTBP1-AS2
hsa-miR-205-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507044
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-706
0.028
1
FAM25BP
hsa-miR-205-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000624613
Biotype: lincRNA
Gene id: ENSG00000273225
Gene Name: FAM25BP
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-271
0.025
Not Conserved
7mer
161-181
0.003
Not Conserved
RP11-23J9.4
hsa-miR-205-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000375206
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5192-5202
0.006
2
7mer
5545-5571
0.004
2
6mer
5812-5829
0.004
8
6mer
5520-5546
0.003
1
7mer
4466-4479
0.002
1
6mer
5380-5405
0.002
1
6mer
3603-3627
0.002
1
6mer
4367-4389
0.001
0
6mer
4029-4050
0.001
5
6mer
2469-2493
0.001
6
6mer
1642-1663
0.001
3
6mer
3691-3711
0.000
2
6mer
3647-3672
0.000
1
6mer
3706-3720
0.000
2
XLOC_013602
hsa-miR-205-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028585
Biotype: transcript isomorph
Gene id: XLOC_013602
Gene Name: XLOC_013602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-342
0.018
0
6mer
78-105
0.005
0
6mer
141-168
0.004
0
XLOC_002708
hsa-miR-205-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006097
Biotype: transcript isomorph
Gene id: XLOC_002708
Gene Name: XLOC_002708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.028
1
RP11-501E14.1
hsa-miR-205-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505556
Biotype: lincRNA
Gene id: ENSG00000249409
Gene Name: RP11-501E14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-134
0.028
0
RP11-47J17.3
hsa-miR-205-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526953
Biotype: antisense
Gene id: ENSG00000254688
Gene Name: RP11-47J17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-479
0.028
2
RP11-756K15.2
hsa-miR-205-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519714
Biotype: lincRNA
Gene id: ENSG00000253871
Gene Name: RP11-756K15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1400-1419
0.028
0
GS1-21A4.1
hsa-miR-205-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562644
Biotype: sense_intronic
Gene id: ENSG00000260603
Gene Name: GS1-21A4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-120
0.017
3
7mer
223-244
0.011
1
SLC7A11-AS1
hsa-miR-205-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512538
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-105
0.028
2
AC097467.2
hsa-miR-205-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000597939
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-107
0.028
2
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