LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
CTC-448F2.4
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588402
Biotype: lincRNA
Gene id: ENSG00000267006
Gene Name: CTC-448F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-373
0.025
1
6mer
747-768
0.004
0
LINC00969
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445430
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-142
0.006
0
8mer+wobble
354-372
0.006
4
6mer
385-411
0.004
6
7mer
2783-2799
0.003
1
6mer
928-953
0.003
2
6mer
1770-1784
0.003
8
6mer
1065-1085
0.002
7
6mer
1009-1030
0.001
2
6mer
1196-1216
0.001
1
FAM66E
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000533615
Biotype: lincRNA
Gene id: ENSG00000225725
Gene Name: FAM66E
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1992-2017
0.015
Not Conserved
6mer
551-561
0.007
1
7mer
1056-1074
0.006
1
LOC100499489
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_036533.1
Biotype: antisense
Gene id: NR_036533.1 (gene)
Gene Name: LOC100499489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-338
0.025
1
6mer
395-413
0.002
0
6mer
1591-1613
0.001
1
FAM215B
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000458392
Biotype: sense_intronic
Gene id: ENSG00000232300
Gene Name: FAM215B
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1409-1430
0.025
0
6mer
300-326
0.002
Not Conserved
8mer+mismatch
1053-1071
0.001
Not Conserved
GCSAML-AS1
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420469
Biotype: antisense
Gene id: ENSG00000227135
Gene Name: GCSAML-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1470-1495
0.012
1
7mer
597-619
0.012
1
6mer
1378-1396
0.005
1
RP11-439H13.2
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541885
Biotype: lincRNA
Gene id: ENSG00000256199
Gene Name: RP11-439H13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-397
0.017
1
7mer
542-557
0.006
Not Conserved
6mer
70-92
0.006
4
XLOC_009849
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020535
Biotype: transcript isomorph
Gene id: XLOC_009849
Gene Name: XLOC_009849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-197
0.028
5
RP11-490G2.2
hsa-miR-205-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561881
Biotype: lincRNA
Gene id: ENSG00000259946
Gene Name: RP11-490G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1587-1607
0.028
0
RP11-798M19.3
hsa-miR-205-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507803
Biotype: antisense
Gene id: ENSG00000248774
Gene Name: RP11-798M19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-16
0.028
5
XLOC_001583
hsa-miR-205-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002713
Biotype: transcript isomorph
Gene id: XLOC_001583
Gene Name: XLOC_001583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1807-1824
0.014
1
8mer
1265-1287
0.009
Not Conserved
6mer
1488-1509
0.004
1
6mer
1552-1576
0.002
0
LINC01362
hsa-miR-205-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452901
Biotype: lincRNA
Gene id: ENSG00000230817
Gene Name: LINC01362
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1634-1658
0.013
1
7mer
563-579
0.010
1
6mer
1312-1322
0.003
2
6mer
965-986
0.002
1
AC003665.1
hsa-miR-205-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433001
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-350
0.028
1
RP1-27K12.2
hsa-miR-205-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000510846
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-115
0.017
1
6mer
267-290
0.009
6
6mer
352-366
0.003
0
XLOC_012047
hsa-miR-205-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025087
Biotype: transcript isomorph
Gene id: XLOC_012047
Gene Name: XLOC_012047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1225-1241
0.015
0
7mer
337-364
0.005
1
6mer
1811-1836
0.005
3
6mer
1580-1604
0.003
Not Conserved
6mer
669-687
0.001
1
RP11-166A12.1
hsa-miR-205-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511194
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1512-1530
0.028
0
RP11-730K11.1
hsa-miR-205-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2646-2671
0.018
1
8mer
1335-1358
0.008
1
6mer
2329-2351
0.002
0
RGS5
hsa-miR-205-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528689
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-488
0.019
0
7mer
19-40
0.009
1
RP11-28G8.1
hsa-miR-205-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570335
Biotype: antisense
Gene id: ENSG00000262833
Gene Name: RP11-28G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-559
0.025
5
6mer
2437-2460
0.002
1
6mer
1845-1871
0.001
1
XLOC_005461
hsa-miR-205-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011948
Biotype: transcript isomorph
Gene id: XLOC_005461
Gene Name: XLOC_005461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-351
0.023
1
6mer
670-684
0.005
1
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