LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-54O7.1
hsa-miR-205-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448179
Biotype: lincRNA
Gene id: ENSG00000230699
Gene Name: RP11-54O7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
573-588
0.009
0
7mer
986-1007
0.007
1
7mer
752-774
0.005
1
7mer
408-426
0.005
0
6mer
2209-2233
0.002
0
6mer
2642-2663
0.002
Not Conserved
LINC00351
hsa-miR-205-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000424926
Biotype: lincRNA
Gene id: ENSG00000226317
Gene Name: LINC00351
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-341
0.012
Not Conserved
7mer
714-735
0.012
3
6mer
563-583
0.004
1
CHRM3-AS2
hsa-miR-205-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428176
Biotype: antisense
Gene id: ENSG00000233355
Gene Name: CHRM3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
712-733
0.029
3
CTB-36H16.2
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565823
Biotype: sense_overlapping
Gene id: ENSG00000260686
Gene Name: CTB-36H16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
807-829
0.014
4
7mer
1601-1621
0.011
1
6mer
344-360
0.004
1
XLOC_008000
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017187
Biotype: transcript isomorph
Gene id: XLOC_008000
Gene Name: XLOC_008000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1024-1040
0.018
Not Conserved
6mer
304-327
0.011
1
AE000661.50
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555460
Biotype: lincRNA
Gene id: ENSG00000259042
Gene Name: AE000661.50
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-281
0.029
1
XLOC_014390
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029707
Biotype: transcript isomorph
Gene id: XLOC_014390
Gene Name: XLOC_014390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-567
0.025
0
6mer
52-69
0.004
1
XLOC_005847
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012290
Biotype: transcript isomorph
Gene id: XLOC_005847
Gene Name: XLOC_005847
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-354
0.029
1
RP11-231C18.2
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508241
Biotype: lincRNA
Gene id: ENSG00000248518
Gene Name: RP11-231C18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-99
0.025
1
6mer
211-232
0.004
0
TIPARP-AS1
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463449
Biotype: antisense
Gene id: ENSG00000243926
Gene Name: TIPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-187
0.029
2
LINC00939
hsa-miR-205-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000507313
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-389
0.025
1
6mer
2544-2566
0.004
1
RP11-4C20.3
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420845
Biotype: lincRNA
Gene id: ENSG00000232259
Gene Name: RP11-4C20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-579
0.029
1
RP11-440G5.2
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442072
Biotype: lincRNA
Gene id: ENSG00000233081
Gene Name: RP11-440G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-95
0.029
2
RP11-785D18.3
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000615051
Biotype: antisense
Gene id: ENSG00000277247
Gene Name: RP11-785D18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-77
0.029
7
AC007319.1
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428329
Biotype: antisense
Gene id: ENSG00000224063
Gene Name: AC007319.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-180
0.029
1
TBL1XR1-AS1
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000617758
Biotype: antisense
Gene id: ENSG00000231310
Gene Name: TBL1XR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-759
0.029
1
XLOC_011610
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023836
Biotype: transcript isomorph
Gene id: XLOC_011610
Gene Name: XLOC_011610
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1226-1249
0.011
1
7mer
749-767
0.010
3
7mer
900-921
0.008
1
AC102948.2
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000412360
Biotype: lincRNA
Gene id: ENSG00000226364
Gene Name: AC102948.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-195
0.022
1
6mer
273-294
0.004
1
6mer
137-158
0.003
0
ZFAT-AS1
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505776
Biotype: antisense
Gene id: ENSG00000248492
Gene Name: ZFAT-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-401
0.021
1
6mer
323-336
0.004
2
6mer
551-569
0.003
1
RP11-465N4.4
hsa-miR-205-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415582
Biotype: antisense
Gene id: ENSG00000234678
Gene Name: RP11-465N4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-221
0.029
1
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