LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
SNHG14
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553108
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1339-1359
0.029
2
ZBED3-AS1
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514288
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-390
0.025
1
6mer
550-568
0.004
0
C20orf166-AS1
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000475015
Biotype: antisense
Gene id: ENSG00000174403
Gene Name: C20orf166-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2460-2478
0.028
1
6mer
1910-1929
0.001
0
PTENP1-AS
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_103745.1
Biotype: lincRNA
Gene id: NR_103745.1 (gene)
Gene Name: PTENP1-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
613-634
0.019
0
6mer
494-516
0.011
1
RP11-356I2.4
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606327
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
833-858
0.029
3
LOC100506714
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038956.1
Biotype: lincRNA
Gene id: NR_038956.1 (gene)
Gene Name: LOC100506714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-430
0.027
Not Conserved
6mer
444-471
0.002
Not Conserved
RP11-588H23.3
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551438
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-164
0.026
0
6mer
35-55
0.003
Not Conserved
CHRM3-AS2
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593855
Biotype: antisense
Gene id: ENSG00000233355
Gene Name: CHRM3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-116
0.029
3
LINC01179
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507838
Biotype: lincRNA
Gene id: ENSG00000249500
Gene Name: LINC01179
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-128
0.019
0
6mer
1744-1767
0.006
4
6mer
401-425
0.004
1
TTN-AS1
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586831
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-242
0.022
1
6mer
460-475
0.007
7
XLOC_010460
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021865
Biotype: transcript isomorph
Gene id: XLOC_010460
Gene Name: XLOC_010460
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-341
0.012
Not Conserved
7mer
1455-1476
0.012
3
6mer
1304-1324
0.004
1
RP11-255P5.2
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607072
Biotype: lincRNA
Gene id: ENSG00000272542
Gene Name: RP11-255P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-177
0.015
1
7mer
475-491
0.008
0
6mer
394-415
0.004
2
6mer
523-537
0.003
1
CFLAR-AS1
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415011
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-160
0.018
2
7mer
831-856
0.007
1
6mer
845-860
0.004
0
CTD-2541J13.2
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581951
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-116
0.029
0
LINC00649
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2149-2175
0.019
1
8mer
7185-7195
0.007
1
6mer
4808-4818
0.001
0
6mer
4182-4197
0.001
1
6mer
4950-4969
0.001
0
6mer
4976-4995
0.000
0
XLOC_009483
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3894-3918
0.024
1
6mer
148-170
0.005
0
RP11-166A12.1
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508992
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-210
0.029
1
RP11-576I22.2
hsa-miR-205-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456083
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-76
0.029
8
RP11-281O15.4
hsa-miR-205-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519491
Biotype: antisense
Gene id: ENSG00000254035
Gene Name: RP11-281O15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-118
0.018
1
7mer
657-668
0.011
0
XLOC_007942
hsa-miR-205-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-35
0.015
0
7mer
571-583
0.005
1
7mer
1233-1247
0.004
0
6mer
511-535
0.003
1
6mer
5468-5493
0.001
1
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