LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
APCDD1L-AS1
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000427140
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1943-1965
0.027
1
6mer
1342-1357
0.002
1
6mer
1355-1381
0.001
1
CTBP1-AS2
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000581398
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-155
0.024
1
6mer
5143-5166
0.005
1
XLOC_002530
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004621
Biotype: transcript isomorph
Gene id: XLOC_002530
Gene Name: XLOC_002530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
751-775
0.029
1
LOC100506714
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038957.1
Biotype: lincRNA
Gene id: NR_038957.1 (gene)
Gene Name: LOC100506714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-430
0.027
Not Conserved
6mer
444-471
0.002
Not Conserved
AP000692.9
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000397184
Biotype: sense_overlapping
Gene id: ENSG00000228107
Gene Name: AP000692.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-80
0.020
1
7mer
96-108
0.010
1
CTD-2024D23.1
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519537
Biotype: lincRNA
Gene id: ENSG00000254082
Gene Name: CTD-2024D23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-244
0.029
0
LINC00671
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000436546
Biotype: lincRNA
Gene id: ENSG00000213373
Gene Name: LINC00671
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-453
0.029
1
RP11-946L16.1
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553075
Biotype: lincRNA
Gene id: ENSG00000257258
Gene Name: RP11-946L16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-78
0.029
1
SNHG1
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540725
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1294-1315
0.020
5
7mer
1020-1037
0.009
1
SEPT5-GP1BB
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037611.1
Biotype: sense
Gene id: NR_037611.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2564-2590
0.015
7
7mer
2047-2073
0.009
9
7mer
2133-2155
0.003
9
7mer
2245-2263
0.003
6
XLOC_003471
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007487
Biotype: transcript isomorph
Gene id: XLOC_003471
Gene Name: XLOC_003471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
604-628
0.027
0
6mer
684-693
0.002
1
RP11-75N4.2
hsa-miR-205-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_045216.1
Biotype: antisense
Gene id: NR_045216.1 (gene)
Gene Name: RP11-75N4.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-224
0.020
0
7mer
1270-1289
0.010
1
XLOC_002168
hsa-miR-205-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004313
Biotype: transcript isomorph
Gene id: XLOC_002168
Gene Name: XLOC_002168
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-498
0.029
1
RP11-75N4.2
hsa-miR-205-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583706
Biotype: antisense
Gene id: ENSG00000264859
Gene Name: RP11-75N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-224
0.019
0
7mer
1308-1327
0.010
1
RP5-1031J8.1
hsa-miR-205-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000444436
Biotype: lincRNA
Gene id: ENSG00000229976
Gene Name: RP5-1031J8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-98
0.029
2
RP11-161I2.1
hsa-miR-205-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524252
Biotype: antisense
Gene id: ENSG00000187229
Gene Name: RP11-161I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
740-760
0.019
0
7mer
387-410
0.010
3
LINC01018
hsa-miR-205-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505626
Biotype: lincRNA
Gene id: ENSG00000250056
Gene Name: LINC01018
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1782-1800
0.019
0
6mer
9-28
0.005
1
6mer
52-65
0.004
1
6mer
1547-1571
0.002
1
RP11-31I22.2
hsa-miR-205-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584863
Biotype: antisense
Gene id: ENSG00000265115
Gene Name: RP11-31I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-98
0.016
1
7mer
20-41
0.013
1
RP11-141J13.5
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573270
Biotype: lincRNA
Gene id: ENSG00000261863
Gene Name: RP11-141J13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-626
0.024
1
6mer
500-524
0.005
2
XLOC_000733
hsa-miR-205-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001415
Biotype: transcript isomorph
Gene id: XLOC_000733
Gene Name: XLOC_000733
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-160
0.026
1
6mer
161-182
0.003
3
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