LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP4-569M23.5
hsa-miR-205-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000599904
Biotype: antisense
Gene id: ENSG00000267882
Gene Name: RP4-569M23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1702-1722
0.030
5
RP11-1E22.1
hsa-miR-205-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510967
Biotype: lincRNA
Gene id: ENSG00000249463
Gene Name: RP11-1E22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-167
0.019
Not Conserved
8mer+wobble
224-249
0.010
0
XLOC_000238
hsa-miR-205-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000973
Biotype: transcript isomorph
Gene id: XLOC_000238
Gene Name: XLOC_000238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-440
0.020
0
7mer
488-507
0.010
1
GAS6-AS1
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458001
Biotype: antisense
Gene id: ENSG00000233695
Gene Name: GAS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7130-7150
0.020
Not Conserved
7mer
704-729
0.004
Not Conserved
6mer
6911-6935
0.003
Not Conserved
6mer
4680-4703
0.001
0
6mer
452-477
0.001
0
7mer
4722-4738
0.001
2
RP11-347D21.2
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416646
Biotype: lincRNA
Gene id: ENSG00000228503
Gene Name: RP11-347D21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-138
0.030
3
RP11-102F4.2
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000533344
Biotype: antisense
Gene id: ENSG00000254557
Gene Name: RP11-102F4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
482-502
0.025
4
6mer
346-357
0.005
2
CTA-544A11.1
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2452-2477
0.017
1
6mer
434-449
0.004
1
6mer
11499-11526
0.004
1
6mer
1384-1404
0.003
3
6mer
11236-11245
0.002
2
XLOC_013064
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1690-1710
0.023
0
7mer
2482-2509
0.006
0
AC097467.2
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000598252
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-138
0.027
2
6mer
372-384
0.003
1
XLOC_000986
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001648
Biotype: transcript isomorph
Gene id: XLOC_000986
Gene Name: XLOC_000986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-266
0.026
1
6mer
792-818
0.003
4
RP11-1024P17.1
hsa-miR-205-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000561507
Biotype: sense_overlapping
Gene id: ENSG00000261468
Gene Name: RP11-1024P17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-870
0.015
1
8mer
1222-1243
0.011
0
6mer
202-225
0.004
1
XLOC_003982
hsa-miR-205-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008503
Biotype: transcript isomorph
Gene id: XLOC_003982
Gene Name: XLOC_003982
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-305
0.029
1
MIR8072
hsa-miR-205-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602918
Biotype: lincRNA
Gene id: ENSG00000256092
Gene Name: MIR8072
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1116-1129
0.013
5
6mer
390-414
0.004
4
7mer
870-890
0.003
1
6mer
311-338
0.003
1
6mer
808-827
0.003
5
6mer
228-250
0.002
0
6mer
780-807
0.002
1
RP13-49I15.6
hsa-miR-205-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611956
Biotype: lincRNA
Gene id: ENSG00000273980
Gene Name: RP13-49I15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-62
0.029
0
PWAR1
hsa-miR-205-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022009.1
Biotype: lincRNA
Gene id: NR_022009.1 (gene)
Gene Name: PWAR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-428
0.022
4
7mer
1046-1070
0.007
1
LINC00919
hsa-miR-205-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561513
Biotype: lincRNA
Gene id: ENSG00000260268
Gene Name: LINC00919
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1340-1364
0.022
5
7mer
1353-1374
0.007
0
RP11-766F14.1
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508578
Biotype: antisense
Gene id: ENSG00000248676
Gene Name: RP11-766F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-191
0.018
1
7mer
80-104
0.007
0
6mer
296-319
0.004
1
RP3-416J7.5
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000381078
Biotype: lincRNA
Gene id: ENSG00000205653
Gene Name: RP3-416J7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-126
0.026
1
6mer
58-70
0.002
0
6mer
887-912
0.001
0
KRBOX1-AS1
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447834
Biotype: antisense
Gene id: ENSG00000206552
Gene Name: KRBOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-212
0.026
1
6mer
487-506
0.003
0
CTD-2014B16.3
hsa-miR-205-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554907
Biotype: lincRNA
Gene id: ENSG00000258847
Gene Name: CTD-2014B16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-376
0.026
1
6mer
513-525
0.003
1
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