LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
AC097467.2
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000601977
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-107
0.027
2
6mer
214-226
0.003
1
CYP1B1-AS1
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606849
Biotype: antisense
Gene id: ENSG00000232973
Gene Name: CYP1B1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-369
0.021
1
6mer
148-161
0.005
3
6mer
135-155
0.004
2
RP11-433C9.2
hsa-miR-205-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419960
Biotype: lincRNA
Gene id: ENSG00000224153
Gene Name: RP11-433C9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
775-794
0.030
1
RP11-407B7.1
hsa-miR-205-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000449350
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-222
0.016
0
7mer
1197-1219
0.010
0
6mer
581-599
0.005
2
NPHP3-ACAD11
hsa-miR-205-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3962-3983
0.008
3
7mer
6519-6545
0.007
6
6mer
7396-7422
0.004
8
6mer
6885-6897
0.004
9
6mer
1325-1335
0.003
8
6mer
3445-3464
0.002
7
6mer
6378-6396
0.002
7
ZNF561-AS1
hsa-miR-205-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587536
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
12-36
0.026
1
6mer
1302-1323
0.004
0
RP11-14O19.1
hsa-miR-205-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438093
Biotype: lincRNA
Gene id: ENSG00000230434
Gene Name: RP11-14O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
370-383
0.030
1
RP11-348N5.7
hsa-miR-205-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000603915
Biotype: antisense
Gene id: ENSG00000270589
Gene Name: RP11-348N5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1228-1255
0.020
1
6mer
163-183
0.006
1
6mer
236-257
0.004
1
RP11-522B15.4
hsa-miR-205-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558246
Biotype: lincRNA
Gene id: ENSG00000259542
Gene Name: RP11-522B15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-300
0.030
1
LINC00942
hsa-miR-205-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_028415.1
Biotype: lincRNA
Gene id: NR_028415.1 (gene)
Gene Name: LINC00942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1603-1620
0.014
1
7mer
132-155
0.007
1
6mer
534-552
0.004
5
6mer
702-725
0.004
6
6mer
1020-1046
0.001
0
RP4-778K6.3
hsa-miR-205-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000476569
Biotype: antisense
Gene id: ENSG00000242154
Gene Name: RP4-778K6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-427
0.030
2
SNHG1
hsa-miR-205-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000537925
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1286-1307
0.021
5
7mer
1020-1037
0.009
1
RP11-448A19.1
hsa-miR-205-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608694
Biotype: lincRNA
Gene id: ENSG00000273329
Gene Name: RP11-448A19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-517
0.017
4
7mer
642-664
0.009
1
7mer
2593-2610
0.004
1
RP11-716H6.2
hsa-miR-205-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526777
Biotype: antisense
Gene id: ENSG00000255219
Gene Name: RP11-716H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-374
0.030
6
XLOC_006768
hsa-miR-205-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014669
Biotype: transcript isomorph
Gene id: XLOC_006768
Gene Name: XLOC_006768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-306
0.030
1
RP11-1022B3.1
hsa-miR-205-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551729
Biotype: lincRNA
Gene id: ENSG00000258117
Gene Name: RP11-1022B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-364
0.025
2
6mer
360-372
0.004
1
ERVK3-1
hsa-miR-205-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000427361
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
836-858
0.015
0
8mer+wobble
564-582
0.006
1
6mer
554-575
0.005
1
6mer
667-690
0.004
1
XLOC_006495
hsa-miR-205-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013864
Biotype: transcript isomorph
Gene id: XLOC_006495
Gene Name: XLOC_006495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-187
0.023
0
6mer
518-532
0.002
0
6mer
579-598
0.002
0
6mer
596-619
0.002
0
CTD-2313F11.1
hsa-miR-205-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000615566
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-861
0.027
1
6mer
224-249
0.003
1
AP001468.58
hsa-miR-205-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000415026
Biotype: antisense
Gene id: ENSG00000228404
Gene Name: AP001468.58
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
425-446
0.021
1
6mer
419-433
0.005
1
6mer
333-353
0.004
0
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