LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009323
hsa-miR-205-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2240-2261
0.015
1
7mer
819-836
0.009
2
6mer
3414-3433
0.002
1
6mer
1821-1844
0.002
1
6mer
1521-1547
0.001
1
6mer
905-928
0.001
1
7mer
1870-1895
0.001
1
LINC00662
hsa-miR-205-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1834-1852
0.010
0
6mer
612-630
0.009
0
6mer
1753-1776
0.008
0
6mer
95-115
0.003
Not Conserved
ZNF561-AS1
hsa-miR-205-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
24-48
0.025
1
6mer
1237-1258
0.005
0
RP11-244H18.1
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621705
Biotype: antisense
Gene id: ENSG00000276888
Gene Name: RP11-244H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2365-2380
0.021
2
7mer
896-922
0.005
1
6mer
292-319
0.004
0
XLOC_007765
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-496
0.012
0
6mer
425-447
0.009
1
6mer
464-487
0.009
1
AC097467.2
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000593387
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-108
0.027
2
6mer
342-354
0.003
1
RP11-346C20.3
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604855
Biotype: lincRNA
Gene id: ENSG00000271009
Gene Name: RP11-346C20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1106-1131
0.011
4
6mer
247-262
0.007
4
6mer
342-362
0.006
7
6mer
926-930
0.006
9
XLOC_010844
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022519
Biotype: transcript isomorph
Gene id: XLOC_010844
Gene Name: XLOC_010844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-34
0.030
1
AC011294.3
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451905
Biotype: lincRNA
Gene id: ENSG00000233539
Gene Name: AC011294.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1855-1869
0.018
0
7mer
1767-1780
0.008
0
6mer
348-371
0.004
1
CTB-61M7.1
hsa-miR-205-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000400864
Biotype: processed_transcript
Gene id: ENSG00000215765
Gene Name: CTB-61M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
948-962
0.024
0
7mer
106-126
0.006
Not Conserved
RP3-395M20.8
hsa-miR-205-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448624
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-100
0.027
0
6mer
238-259
0.003
0
LINC00476
hsa-miR-205-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429781
Biotype: processed_transcript
Gene id: ENSG00000175611
Gene Name: LINC00476
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-659
0.016
2
9mer
2262-2280
0.010
0
6mer
1230-1244
0.003
5
6mer
1762-1788
0.002
1
XLOC_012034
hsa-miR-205-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024749
Biotype: transcript isomorph
Gene id: XLOC_012034
Gene Name: XLOC_012034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-562
0.026
1
6mer
787-803
0.002
0
6mer
1011-1037
0.002
0
LINC00939
hsa-miR-205-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545784
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-391
0.026
1
6mer
1802-1824
0.004
1
AC079779.6
hsa-miR-205-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430529
Biotype: lincRNA
Gene id: ENSG00000233684
Gene Name: AC079779.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-323
0.026
0
6mer
535-555
0.004
1
XLOC_010797
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022468
Biotype: transcript isomorph
Gene id: XLOC_010797
Gene Name: XLOC_010797
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
852-872
0.030
6
GABPB1-AS1
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1951-1973
0.007
1
7mer
6229-6254
0.005
3
7mer
6769-6783
0.005
1
7mer
3942-3967
0.003
1
6mer
1115-1134
0.002
1
6mer
747-773
0.002
1
7mer
6797-6821
0.002
0
6mer
9300-9326
0.002
1
6mer
2977-2999
0.001
1
6mer
6823-6842
0.001
1
6mer
6806-6831
0.000
1
LL22NC03-27C5.1
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624219
Biotype: lincRNA
Gene id: ENSG00000278890
Gene Name: LL22NC03-27C5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4438-4455
0.021
1
6mer
500-522
0.003
1
6mer
133-156
0.002
1
6mer
4001-4020
0.001
1
8mer+wobble
4980-5003
0.001
Not Conserved
6mer
4182-4202
0.001
Not Conserved
6mer
4488-4513
0.001
0
CTD-2516F10.2
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000622955
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2657-2677
0.026
0
6mer
2422-2444
0.004
1
C1QTNF3-AMACR
hsa-miR-205-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037951.1
Biotype: sense
Gene id: NR_037951.1 (gene)
Gene Name: C1QTNF3-AMACR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2991-3007
0.014
1
8mer
3344-3361
0.008
1
6mer
2697-2715
0.004
9
6mer
595-599
0.003
1
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