LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
FAM226A
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026595.2
Biotype: sense
Gene id: NR_026595.2 (gene)
Gene Name: FAM226A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1359-1382
0.031
4
AC010132.10
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433315
Biotype: lincRNA
Gene id: ENSG00000231539
Gene Name: AC010132.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-70
0.024
2
6mer
136-163
0.007
2
AC097467.2
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512269
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-93
0.028
2
6mer
492-504
0.003
1
RP11-544A12.8
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000502188
Biotype: antisense
Gene id: ENSG00000246851
Gene Name: RP11-544A12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
720-735
0.021
3
7mer
1866-1878
0.007
3
6mer
21-36
0.004
1
LMF1-AS1
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569574
Biotype: antisense
Gene id: ENSG00000260439
Gene Name: LMF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-283
0.021
0
6mer
31-48
0.004
0
8mer+wobble
618-638
0.003
0
6mer
340-351
0.002
Not Conserved
6mer
340-367
0.002
0
SOX9-AS1
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588177
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-166
0.031
1
RP5-837J1.4
hsa-miR-205-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590309
Biotype: lincRNA
Gene id: ENSG00000267457
Gene Name: RP5-837J1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-123
0.031
4
LINC00307
hsa-miR-205-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000451410
Biotype: lincRNA
Gene id: ENSG00000227342
Gene Name: LINC00307
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-147
0.028
1
6mer
351-376
0.003
0
OR2A1-AS1
hsa-miR-205-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000498397
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-158
0.031
1
AC007620.3
hsa-miR-205-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598857
Biotype: antisense
Gene id: ENSG00000242539
Gene Name: AC007620.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-198
0.031
1
CADM2-AS1
hsa-miR-205-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476021
Biotype: antisense
Gene id: ENSG00000239519
Gene Name: CADM2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1967-1981
0.013
1
8mer
2125-2152
0.010
0
7mer
2314-2334
0.008
0
RP11-115J23.1
hsa-miR-205-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511073
Biotype: lincRNA
Gene id: ENSG00000249867
Gene Name: RP11-115J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-74
0.031
1
SNX29P2
hsa-miR-205-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604430
Biotype: lincRNA
Gene id: ENSG00000198106
Gene Name: SNX29P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4496-4517
0.012
0
7mer
1372-1394
0.008
6
7mer
1722-1743
0.007
5
7mer
609-625
0.003
1
RP11-529K1.2
hsa-miR-205-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570278
Biotype: retained_intron
Gene id: ENSG00000261777
Gene Name: RP11-529K1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-90
0.031
1
OSER1-AS1
hsa-miR-205-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000435163
Biotype: lincRNA
Gene id: ENSG00000223891
Gene Name: OSER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-682
0.026
2
6mer
622-642
0.005
2
LINC01111
hsa-miR-205-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518732
Biotype: lincRNA
Gene id: ENSG00000254300
Gene Name: LINC01111
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-201
0.031
1
AC008074.4
hsa-miR-205-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436433
Biotype: lincRNA
Gene id: ENSG00000223863
Gene Name: AC008074.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-231
0.028
3
6mer
534-548
0.003
1
XLOC_013535
hsa-miR-205-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028177
Biotype: transcript isomorph
Gene id: XLOC_013535
Gene Name: XLOC_013535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-34
0.031
1
CTD-3131K8.3
hsa-miR-205-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596192
Biotype: antisense
Gene id: ENSG00000269161
Gene Name: CTD-3131K8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-162
0.031
0
XLOC_001671
hsa-miR-205-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-850
0.005
Not Conserved
6mer
9773-9799
0.005
0
6mer
9636-9649
0.004
0
7mer
3754-3779
0.003
Not Conserved
6mer
9049-9068
0.003
0
6mer
8491-8509
0.003
0
7mer
4399-4417
0.003
Not Conserved
6mer
5758-5775
0.002
0
6mer
8075-8101
0.002
0
6mer
7936-7959
0.002
0
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