LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-172E10.1
hsa-miR-205-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518302
Biotype: lincRNA
Gene id: ENSG00000254060
Gene Name: RP11-172E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-84
0.028
4
6mer
322-344
0.003
0
LINC00298
hsa-miR-205-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456681
Biotype: lincRNA
Gene id: ENSG00000235665
Gene Name: LINC00298
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
284-308
0.031
1
AC010127.3
hsa-miR-205-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597623
Biotype: antisense
Gene id: ENSG00000236107
Gene Name: AC010127.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
683-695
0.030
1
6mer
88-109
0.001
0
AC097713.4
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439798
Biotype: lincRNA
Gene id: ENSG00000231682
Gene Name: AC097713.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
49-69
0.031
1
AC018643.4
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445459
Biotype: antisense
Gene id: ENSG00000225144
Gene Name: AC018643.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-88
0.031
1
RP11-23J9.4
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000534123
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5575-5585
0.006
2
7mer
5928-5954
0.005
2
6mer
6195-6212
0.004
8
6mer
5903-5929
0.004
1
6mer
5763-5788
0.002
1
7mer
4771-4784
0.002
1
6mer
3404-3428
0.002
1
6mer
4672-4694
0.001
0
6mer
2270-2294
0.001
6
6mer
4334-4355
0.001
5
6mer
1443-1464
0.001
3
6mer
3448-3473
0.000
1
6mer
3492-3512
0.000
2
6mer
3507-3521
0.000
2
XLOC_001121
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001746
Biotype: transcript isomorph
Gene id: XLOC_001121
Gene Name: XLOC_001121
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1038-1061
0.031
5
XLOC_008323
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017647
Biotype: transcript isomorph
Gene id: XLOC_008323
Gene Name: XLOC_008323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-136
0.031
0
RP11-35J10.5
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527565
Biotype: lincRNA
Gene id: ENSG00000271758
Gene Name: RP11-35J10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-578
0.028
3
6mer
145-171
0.003
1
AC009120.11
hsa-miR-205-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000616116
Biotype: lincRNA
Gene id: ENSG00000275236
Gene Name: AC009120.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1046-1067
0.031
1
RP11-575L7.2
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000458016
Biotype: antisense
Gene id: ENSG00000226877
Gene Name: RP11-575L7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-47
0.031
2
CTD-3099C6.5
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599143
Biotype: antisense
Gene id: ENSG00000269349
Gene Name: CTD-3099C6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-167
0.015
1
7mer
68-83
0.014
0
6mer
573-591
0.003
0
TBL1XR1-AS1
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454723
Biotype: antisense
Gene id: ENSG00000231310
Gene Name: TBL1XR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-354
0.031
1
HOXA11-AS
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000520395
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
856-878
0.020
5
7mer
718-739
0.006
1
6mer
840-858
0.004
3
FTX
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602776
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-163
0.031
2
XLOC_006983
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014917
Biotype: transcript isomorph
Gene id: XLOC_006983
Gene Name: XLOC_006983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23-38
0.031
1
LINC00901
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487512
Biotype: antisense
Gene id: ENSG00000242385
Gene Name: LINC00901
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-46
0.023
7
6mer
1110-1130
0.004
2
6mer
857-874
0.004
5
RMST
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548886
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-902
0.023
6
6mer
887-913
0.004
8
6mer
470-489
0.004
2
SC22CB-109E1.1
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3169-3181
0.017
1
8mer
3678-3698
0.007
0
6mer
4828-4853
0.002
1
6mer
8562-8584
0.001
1
6mer
6794-6808
0.001
Not Conserved
6mer
4926-4951
0.001
0
6mer
6893-6919
0.001
1
RP1-86C11.7
hsa-miR-205-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607175
Biotype: lincRNA
Gene id: ENSG00000272468
Gene Name: RP1-86C11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-152
0.031
0
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