LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011043
hsa-miR-205-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022372
Biotype: transcript isomorph
Gene id: XLOC_011043
Gene Name: XLOC_011043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1522-1540
0.010
6
7mer
196-218
0.009
0
7mer
2550-2563
0.008
0
6mer
642-661
0.004
0
CCDC26
hsa-miR-205-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523151
Biotype: lincRNA
Gene id: ENSG00000229140
Gene Name: CCDC26
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1094-1115
0.024
1
7mer
1358-1384
0.007
1
XLOC_007508
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016123
Biotype: transcript isomorph
Gene id: XLOC_007508
Gene Name: XLOC_007508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
607-621
0.031
2
CTC-378H22.2
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000559786
Biotype: antisense
Gene id: ENSG00000259436
Gene Name: CTC-378H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1914-1933
0.023
3
6mer
1447-1472
0.005
4
6mer
1467-1493
0.002
1
6mer
1058-1077
0.002
1
GRM7-AS3
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452244
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-389
0.026
Not Conserved
6mer
261-281
0.005
2
XLOC_010353
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021759
Biotype: transcript isomorph
Gene id: XLOC_010353
Gene Name: XLOC_010353
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2842-2864
0.015
1
8mer
1837-1859
0.014
1
6mer
2025-2044
0.001
0
6mer
1604-1625
0.001
1
CTD-2184C24.2
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000532515
Biotype: antisense
Gene id: ENSG00000254718
Gene Name: CTD-2184C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1528-1546
0.010
6
7mer
202-224
0.009
0
7mer
2556-2569
0.008
0
6mer
648-667
0.004
0
RP11-79E3.3
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505018
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
782-808
0.031
0
XLOC_014019
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029091
Biotype: transcript isomorph
Gene id: XLOC_014019
Gene Name: XLOC_014019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3731-3757
0.025
3
6mer
3654-3676
0.003
0
6mer
3435-3459
0.002
0
6mer
1719-1737
0.002
1
LINC00238
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000359454
Biotype: lincRNA
Gene id: ENSG00000196553
Gene Name: LINC00238
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-214
0.023
4
6mer
446-460
0.008
7
PAX8-AS1
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000510859
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-129
0.016
1
7mer
226-247
0.013
3
6mer
1805-1822
0.003
1
CTA-212A2.3
hsa-miR-205-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12970-12986
0.005
0
7mer
7764-7788
0.005
1
6mer
14201-14223
0.004
0
6mer
59-81
0.003
Not Conserved
6mer
8049-8072
0.003
3
6mer
13792-13814
0.003
0
6mer
6129-6148
0.002
4
6mer
10764-10785
0.002
3
6mer
1233-1260
0.001
0
6mer
6477-6501
0.001
Not Conserved
6mer
2789-2816
0.001
0
6mer
8070-8089
0.000
2
RP11-308N19.1
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435485
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
689-710
0.020
6
6mer
19-39
0.008
4
6mer
1315-1335
0.003
1
SLC7A11-AS1
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512786
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-612
0.031
2
AC104134.2
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413234
Biotype: antisense
Gene id: ENSG00000225420
Gene Name: AC104134.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-387
0.018
1
7mer
1457-1480
0.010
3
6mer
1241-1255
0.004
4
LINC00467
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423222
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-205
0.021
1
6mer
434-453
0.005
1
6mer
702-726
0.004
2
6mer
797-819
0.001
0
XLOC_005414
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011913
Biotype: transcript isomorph
Gene id: XLOC_005414
Gene Name: XLOC_005414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3733-3757
0.023
1
6mer
493-513
0.003
2
7mer
2208-2228
0.003
0
6mer
3402-3414
0.003
1
RP5-1086L22.1
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452071
Biotype: antisense
Gene id: ENSG00000230960
Gene Name: RP5-1086L22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-460
0.018
1
7mer
18-41
0.014
0
RP11-6O2.3
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564527
Biotype: antisense
Gene id: ENSG00000261616
Gene Name: RP11-6O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2354-2376
0.019
1
7mer
982-1001
0.006
0
7mer
1860-1879
0.006
1
RP11-362K2.2
hsa-miR-205-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552519
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-563
0.031
0
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