LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-799D4.2
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590144
Biotype: processed_transcript
Gene id: ENSG00000266981
Gene Name: RP11-799D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-415
0.032
0
XLOC_006529
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013891
Biotype: transcript isomorph
Gene id: XLOC_006529
Gene Name: XLOC_006529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4190-4217
0.015
1
8mer
2420-2440
0.007
2
6mer
4749-4762
0.005
2
7mer
4053-4078
0.004
1
RP4-539M6.14
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610156
Biotype: antisense
Gene id: ENSG00000181123
Gene Name: RP4-539M6.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-848
0.025
0
6mer
625-643
0.007
9
RMST
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552411
Biotype: retained_intron
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-513
0.024
6
6mer
498-524
0.004
8
6mer
175-200
0.004
1
RP5-991G20.1
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563328
Biotype: antisense
Gene id: ENSG00000259768
Gene Name: RP5-991G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1130
0.013
8
6mer
369-394
0.008
11
7mer
2161-2179
0.004
3
6mer
4677-4703
0.003
6
6mer
1992-2016
0.002
7
6mer
3619-3636
0.001
1
6mer
1251-1272
0.000
Not Conserved
XLOC_000303
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001038
Biotype: transcript isomorph
Gene id: XLOC_000303
Gene Name: XLOC_000303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-139
0.027
3
6mer
624-642
0.003
0
6mer
1930-1949
0.001
0
RP11-122L9.1
hsa-miR-205-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000618284
Biotype: lincRNA
Gene id: ENSG00000277930
Gene Name: RP11-122L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-114
0.013
1
7mer
434-454
0.010
1
6mer
218-245
0.006
3
6mer
426-450
0.003
1
XLOC_006844
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014759
Biotype: transcript isomorph
Gene id: XLOC_006844
Gene Name: XLOC_006844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-235
0.032
1
TTN-AS1
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592630
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-639
0.032
1
RP11-613C6.2
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000512720
Biotype: antisense
Gene id: ENSG00000250751
Gene Name: RP11-613C6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-522
0.032
1
XLOC_013333
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027356
Biotype: transcript isomorph
Gene id: XLOC_013333
Gene Name: XLOC_013333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1181-1207
0.012
1
7mer
1611-1633
0.006
0
6mer
1678-1699
0.005
1
6mer
219-239
0.005
1
6mer
1286-1299
0.003
1
LINC01101
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027181.1
Biotype: lincRNA
Gene id: NR_027181.1 (gene)
Gene Name: LINC01101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-224
0.029
1
6mer
308-333
0.003
1
XLOC_008274
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5037-5061
0.012
1
7mer
4774-4785
0.009
1
7mer
4188-4206
0.006
1
6mer
4670-4697
0.002
1
6mer
4362-4388
0.002
1
TSNAX-DISC1
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028393.1
Biotype: sense
Gene id: NR_028393.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2636-2662
0.014
5
7mer
3099-3124
0.010
8
6mer
225-240
0.006
7
6mer
2894-2907
0.002
Not Conserved
RP11-2L8.1
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450500
Biotype: lincRNA
Gene id: ENSG00000225790
Gene Name: RP11-2L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-363
0.032
9
AP000569.9
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000607953
Biotype: lincRNA
Gene id: ENSG00000273102
Gene Name: AP000569.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-51
0.028
3
6mer
383-398
0.004
2
XLOC_010719
hsa-miR-205-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022108
Biotype: transcript isomorph
Gene id: XLOC_010719
Gene Name: XLOC_010719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2851-2874
0.015
1
7mer
3574-3601
0.010
2
6mer
739-763
0.004
2
6mer
3344-3363
0.003
Not Conserved
RP11-588H23.3
hsa-miR-205-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548687
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-560
0.023
0
6mer
145-165
0.003
Not Conserved
6mer
2418-2435
0.002
1
6mer
1079-1102
0.002
4
6mer
665-688
0.001
0
CTD-2383I20.1
hsa-miR-205-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506305
Biotype: lincRNA
Gene id: ENSG00000249994
Gene Name: CTD-2383I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-201
0.032
0
AC097467.2
hsa-miR-205-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602249
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-107
0.031
2
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