LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001560
hsa-miR-205-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003759
Biotype: transcript isomorph
Gene id: XLOC_001560
Gene Name: XLOC_001560
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-76
0.032
0
RP11-306G20.1
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000587038
Biotype: antisense
Gene id: ENSG00000244036
Gene Name: RP11-306G20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
406-433
0.022
0
8mer
462-489
0.010
0
RP11-705O24.1
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520097
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-397
0.026
1
6mer
480-501
0.006
2
SVIL-AS1
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-462
0.021
1
6mer
466-493
0.011
1
RP11-119D18.1
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474711
Biotype: lincRNA
Gene id: ENSG00000240895
Gene Name: RP11-119D18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-69
0.032
2
RP11-23J9.4
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000357054
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4993-5003
0.007
2
7mer
5346-5372
0.005
2
6mer
5613-5630
0.004
8
6mer
5321-5347
0.004
1
6mer
5181-5206
0.002
1
6mer
3830-3851
0.002
5
7mer
4267-4280
0.002
1
6mer
3404-3428
0.002
1
6mer
4168-4190
0.002
0
6mer
2270-2294
0.001
6
6mer
1443-1464
0.001
3
6mer
3448-3473
0.000
1
6mer
3492-3512
0.000
2
6mer
3507-3521
0.000
2
RP4-539M6.14
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610737
Biotype: antisense
Gene id: ENSG00000181123
Gene Name: RP4-539M6.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
951-970
0.026
0
6mer
747-765
0.006
9
RP11-734K23.9
hsa-miR-205-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613749
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1877-1894
0.019
1
8mer
1335-1357
0.007
Not Conserved
6mer
1558-1579
0.004
1
6mer
1622-1646
0.002
0
LINC01212
hsa-miR-205-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488861
Biotype: lincRNA
Gene id: ENSG00000240405
Gene Name: LINC01212
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-153
0.028
1
6mer
225-237
0.004
2
RP11-154D6.1
hsa-miR-205-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591156
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-59
0.027
1
6mer
309-334
0.003
1
6mer
236-257
0.002
0
RP11-392P7.6
hsa-miR-205-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499948
Biotype: antisense
Gene id: ENSG00000247498
Gene Name: RP11-392P7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
537-550
0.011
1
8mer
419-437
0.011
2
7mer
1468-1490
0.007
1
6mer
402-421
0.002
1
LINC00703
hsa-miR-205-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454152
Biotype: lincRNA
Gene id: ENSG00000224382
Gene Name: LINC00703
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1991-2010
0.012
0
7mer
1835-1847
0.009
0
7mer
1870-1894
0.008
1
6mer
2110-2132
0.003
1
PCBP1-AS1
hsa-miR-205-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596028
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-333
0.032
1
RP11-240L7.4
hsa-miR-205-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448857
Biotype: antisense
Gene id: ENSG00000232283
Gene Name: RP11-240L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-170
0.032
0
AC096570.2
hsa-miR-205-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419013
Biotype: lincRNA
Gene id: ENSG00000234207
Gene Name: AC096570.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-558
0.032
6
PAX8-AS1
hsa-miR-205-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10048-10073
0.013
0
7mer
104-125
0.010
3
6mer
9-35
0.003
0
6mer
1683-1700
0.001
1
6mer
7438-7457
0.001
4
6mer
8166-8180
0.001
1
6mer
4249-4273
0.001
3
6mer
3417-3439
0.001
2
6mer
4318-4342
0.001
0
AP000233.4
hsa-miR-205-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000409758
Biotype: lincRNA
Gene id: ENSG00000222042
Gene Name: AP000233.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-194
0.021
0
7mer
188-211
0.011
0
LINC00238
hsa-miR-205-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000411796
Biotype: lincRNA
Gene id: ENSG00000196553
Gene Name: LINC00238
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-194
0.024
4
6mer
426-440
0.008
7
SVIL-AS1
hsa-miR-205-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623175
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-299
0.020
1
6mer
303-330
0.011
1
MALAT1
hsa-miR-205-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544868
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-382
0.028
1
6mer
206-232
0.004
1
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