LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-238K6.1
hsa-miR-205-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518973
Biotype: lincRNA
Gene id: ENSG00000253288
Gene Name: RP11-238K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-585
0.020
1
9mer
2513-2539
0.007
0
6mer
1568-1583
0.002
2
6mer
2677-2686
0.002
1
6mer
1087-1110
0.002
1
AC108463.1
hsa-miR-205-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451230
Biotype: lincRNA
Gene id: ENSG00000230499
Gene Name: AC108463.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-348
0.032
1
RP11-252P19.1
hsa-miR-205-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000435810
Biotype: antisense
Gene id: ENSG00000236627
Gene Name: RP11-252P19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-187
0.028
0
6mer
22-35
0.005
2
FTX
hsa-miR-205-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000418855
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-101
0.032
2
RP11-460N16.1
hsa-miR-205-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110000.1
Biotype: lincRNA
Gene id: NR_110000.1 (gene)
Gene Name: RP11-460N16.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-233
0.027
1
6mer
305-317
0.003
2
6mer
1064-1083
0.002
3
SNHG16
hsa-miR-205-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000448136
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1811-1828
0.022
1
7mer
637-655
0.006
1
6mer
245-266
0.004
1
SOX2-OT
hsa-miR-205-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493521
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
96-117
0.019
1
6mer
176-195
0.005
7
6mer
961-980
0.004
8
8mer
602-626
0.003
1
6mer
542-558
0.002
4
RP11-230G5.2
hsa-miR-205-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535315
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-29
0.021
0
9mer
515-535
0.011
Not Conserved
SLC7A11-AS1
hsa-miR-205-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510767
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2964-2978
0.012
0
7mer
438-459
0.008
1
8mer
2011-2029
0.006
2
6mer
1908-1924
0.002
3
6mer
130-151
0.002
Not Conserved
6mer
1070-1094
0.002
1
DEPDC1-AS1
hsa-miR-205-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428732
Biotype: antisense
Gene id: ENSG00000234264
Gene Name: DEPDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
814-832
0.029
0
6mer
292-313
0.003
3
RP11-493L12.3
hsa-miR-205-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547748
Biotype: antisense
Gene id: ENSG00000257925
Gene Name: RP11-493L12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-193
0.027
3
6mer
527-551
0.006
2
RP11-449D8.1
hsa-miR-205-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577994
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1164-1189
0.024
1
6mer
127-140
0.004
3
6mer
252-274
0.004
3
AC097724.3
hsa-miR-205-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444501
Biotype: antisense
Gene id: ENSG00000226833
Gene Name: AC097724.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-26
0.032
0
RP11-960D24.1
hsa-miR-205-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505409
Biotype: lincRNA
Gene id: ENSG00000248990
Gene Name: RP11-960D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-271
0.018
1
7mer
198-219
0.010
0
6mer
260-286
0.005
2
AC097467.2
hsa-miR-205-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508191
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.032
2
ZNF582-AS1
hsa-miR-205-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589888
Biotype: lincRNA
Gene id: ENSG00000267454
Gene Name: ZNF582-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-389
0.029
2
6mer
287-302
0.003
1
RP11-23J9.4
hsa-miR-205-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000532526
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4442-4452
0.007
2
7mer
4795-4821
0.005
2
6mer
5062-5079
0.004
8
6mer
4770-4796
0.004
1
6mer
4630-4655
0.002
1
6mer
3390-3411
0.002
5
7mer
3827-3840
0.002
1
6mer
2964-2988
0.002
1
6mer
3728-3750
0.001
0
6mer
1830-1854
0.001
6
6mer
1132-1153
0.001
3
6mer
3008-3033
0.000
1
6mer
3052-3072
0.000
2
6mer
3067-3081
0.000
2
RP11-576I22.2
hsa-miR-205-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446102
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
949-968
0.019
8
7mer
457-478
0.013
1
TEX41
hsa-miR-205-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445791
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4300-4319
0.013
3
7mer
27-39
0.008
3
7mer
1074-1097
0.006
1
6mer
782-807
0.003
0
6mer
2073-2092
0.001
1
SNHG1
hsa-miR-205-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000541416
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
850-871
0.023
5
7mer
576-593
0.009
1
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