LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
LMF1-AS1
hsa-miR-205-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567820
Biotype: antisense
Gene id: ENSG00000260439
Gene Name: LMF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-168
0.023
0
6mer
71-88
0.003
0
8mer+wobble
503-523
0.003
0
6mer
225-236
0.002
Not Conserved
6mer
225-252
0.002
0
FAM25BP
hsa-miR-205-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623997
Biotype: lincRNA
Gene id: ENSG00000273225
Gene Name: FAM25BP
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-216
0.029
Not Conserved
7mer
106-126
0.004
Not Conserved
GNG12-AS1
hsa-miR-205-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420587
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-349
0.033
1
XLOC_000957
hsa-miR-205-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000094
Biotype: transcript isomorph
Gene id: XLOC_000957
Gene Name: XLOC_000957
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-501
0.021
1
7mer
2105-2121
0.007
1
6mer
2011-2024
0.003
2
6mer
430-445
0.003
2
CTB-89H12.4
hsa-miR-205-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-39
0.023
8
6mer
8191-8212
0.005
4
6mer
1476-1492
0.003
6
6mer
8177-8200
0.003
1
RP5-1074L1.1
hsa-miR-205-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449169
Biotype: antisense
Gene id: ENSG00000227963
Gene Name: RP5-1074L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-505
0.021
1
7mer
2109-2125
0.007
1
6mer
2015-2028
0.003
2
6mer
434-449
0.003
2
MIR335
hsa-miR-205-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000604666
Biotype: antisense
Gene id: ENSG00000270823
Gene Name: MIR335
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-239
0.031
4
6mer
1126-1149
0.002
2
LINC00919
hsa-miR-205-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565742
Biotype: lincRNA
Gene id: ENSG00000260268
Gene Name: LINC00919
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1340-1364
0.026
5
7mer
1353-1374
0.007
0
C3orf67-AS1
hsa-miR-205-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493123
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-93
0.033
1
XLOC_010731
hsa-miR-205-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022122
Biotype: transcript isomorph
Gene id: XLOC_010731
Gene Name: XLOC_010731
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-274
0.012
1
6mer
520-543
0.005
0
6mer
351-375
0.004
2
6mer
541-565
0.003
0
6mer
450-469
0.003
0
6mer
479-498
0.003
0
6mer
496-518
0.002
Not Conserved
LINC01091
hsa-miR-205-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514823
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-63
0.022
4
8mer
4082-4107
0.010
1
FAM25BP
hsa-miR-205-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000624374
Biotype: retained_intron
Gene id: ENSG00000273225
Gene Name: FAM25BP
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-184
0.029
Not Conserved
7mer
74-94
0.004
Not Conserved
AC008079.10
hsa-miR-205-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10861-10887
0.008
9
9mer
13946-13964
0.007
1
7mer
15067-15087
0.003
2
6mer
6367-6383
0.002
2
6mer
19621-19645
0.002
1
6mer
19245-19259
0.002
1
6mer
19772-19787
0.002
0
6mer
3199-3210
0.001
1
6mer
7853-7877
0.001
0
6mer
18318-18344
0.001
0
6mer
4583-4605
0.001
0
6mer
13984-14002
0.001
0
6mer
3789-3807
0.001
1
6mer
3526-3546
0.000
0
RP11-379B18.5
hsa-miR-205-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468859
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1156-1176
0.019
2
6mer
1868-1894
0.006
4
6mer
721-746
0.005
2
6mer
465-485
0.002
0
RP11-586K2.1
hsa-miR-205-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521936
Biotype: antisense
Gene id: ENSG00000253553
Gene Name: RP11-586K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-779
0.033
2
LINC01018
hsa-miR-205-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507582
Biotype: lincRNA
Gene id: ENSG00000250056
Gene Name: LINC01018
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1798-1816
0.027
0
6mer
1563-1587
0.004
1
6mer
149-175
0.001
0
XLOC_003345
hsa-miR-205-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006717
Biotype: transcript isomorph
Gene id: XLOC_003345
Gene Name: XLOC_003345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-217
0.033
3
RP5-978I12.1
hsa-miR-205-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000562268
Biotype: lincRNA
Gene id: ENSG00000260951
Gene Name: RP5-978I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-275
0.018
4
7mer
718-745
0.011
2
6mer
129-146
0.004
1
LINC01212
hsa-miR-205-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483525
Biotype: lincRNA
Gene id: ENSG00000240405
Gene Name: LINC01212
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-233
0.027
1
6mer
305-317
0.003
2
6mer
1064-1083
0.002
3
XLOC_007089
hsa-miR-205-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10933-10952
0.006
Not Conserved
6mer
3073-3098
0.005
1
6mer
8427-8452
0.004
1
7mer
7494-7506
0.004
0
6mer
10980-10999
0.004
0
6mer
203-229
0.004
Not Conserved
6mer
433-445
0.002
Not Conserved
6mer
3647-3666
0.002
0
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