LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-362K14.6
hsa-miR-205-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602835
Biotype: antisense
Gene id: ENSG00000270096
Gene Name: RP11-362K14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-505
0.017
1
7mer
1035-1050
0.017
1
AC019186.1
hsa-miR-205-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447019
Biotype: lincRNA
Gene id: ENSG00000234584
Gene Name: AC019186.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-432
0.025
1
7mer
393-414
0.009
Not Conserved
XLOC_011785
hsa-miR-205-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024886
Biotype: transcript isomorph
Gene id: XLOC_011785
Gene Name: XLOC_011785
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-126
0.028
1
6mer
51-69
0.005
3
RP11-497H16.9
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602697
Biotype: lincRNA
Gene id: ENSG00000269983
Gene Name: RP11-497H16.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-483
0.030
1
6mer
170-183
0.004
1
XLOC_007475
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016085
Biotype: transcript isomorph
Gene id: XLOC_007475
Gene Name: XLOC_007475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-128
0.022
1
7mer
746-768
0.004
0
6mer
1014-1034
0.003
0
6mer
189-210
0.002
1
6mer
710-729
0.002
1
LLNLR-268E12.1
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000617916
Biotype: lincRNA
Gene id: ENSG00000276445
Gene Name: LLNLR-268E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
435-457
0.034
1
RRS1-AS1
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499642
Biotype: lincRNA
Gene id: ENSG00000246145
Gene Name: RRS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-746
0.017
1
8mer
2031-2045
0.013
3
6mer
638-651
0.002
1
6mer
702-726
0.002
0
RP11-120A1.1
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515680
Biotype: antisense
Gene id: ENSG00000250243
Gene Name: RP11-120A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
172-196
0.034
1
ZNRF3-AS1
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000325660
Biotype: antisense
Gene id: ENSG00000177993
Gene Name: ZNRF3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-509
0.018
3
8mer
1142-1159
0.011
1
6mer
1331-1349
0.003
0
6mer
1044-1064
0.002
6
KB-1552D7.2
hsa-miR-205-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000319051
Biotype: pseudogene
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1797-1816
0.034
1
XLOC_012830
hsa-miR-205-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026504
Biotype: transcript isomorph
Gene id: XLOC_012830
Gene Name: XLOC_012830
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-218
0.034
3
KB-1552D7.2
hsa-miR-205-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622091
Biotype: sense_intronic
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1798-1817
0.034
1
RP1-8B1.4
hsa-miR-205-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444038
Biotype: antisense
Gene id: ENSG00000231769
Gene Name: RP1-8B1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-322
0.034
1
CTB-49A3.4
hsa-miR-205-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507403
Biotype: antisense
Gene id: ENSG00000250244
Gene Name: CTB-49A3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-199
0.034
4
RP11-946L20.2
hsa-miR-205-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523557
Biotype: lincRNA
Gene id: ENSG00000253877
Gene Name: RP11-946L20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-259
0.019
0
7mer
119-136
0.014
1
RP11-4K16.2
hsa-miR-205-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522828
Biotype: lincRNA
Gene id: ENSG00000253972
Gene Name: RP11-4K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-173
0.033
1
XLOC_004271
hsa-miR-205-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010613
Biotype: transcript isomorph
Gene id: XLOC_004271
Gene Name: XLOC_004271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
755-780
0.014
1
9mer
2255-2273
0.013
0
6mer
16-29
0.004
1
6mer
2020-2044
0.002
1
6mer
403-429
0.001
0
XLOC_004701
hsa-miR-205-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010241
Biotype: transcript isomorph
Gene id: XLOC_004701
Gene Name: XLOC_004701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-221
0.033
1
XLOC_001191
hsa-miR-205-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002578
Biotype: transcript isomorph
Gene id: XLOC_001191
Gene Name: XLOC_001191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-296
0.024
1
6mer
59-82
0.005
Not Conserved
6mer
76-102
0.005
1
MIR205HG
hsa-miR-205-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431096
Biotype: lincRNA
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
722-746
0.033
1
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