LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
KCNJ6-AS1
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435001
Biotype: sense_intronic
Gene id: ENSG00000233213
Gene Name: KCNJ6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
103-126
0.035
1
RP11-883A18.3
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579385
Biotype: lincRNA
Gene id: ENSG00000265728
Gene Name: RP11-883A18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-51
0.025
0
6mer
775-779
0.010
0
MIR205HG
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366437
Biotype: lincRNA
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
518-542
0.035
1
XLOC_008328
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1096-1116
0.035
0
MIR205HG
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440276
Biotype: lincRNA
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
353-377
0.035
1
XLOC_013449
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028493
Biotype: transcript isomorph
Gene id: XLOC_013449
Gene Name: XLOC_013449
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-249
0.024
1
6mer
195-222
0.006
1
6mer
616-643
0.004
0
LINC01060
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503580
Biotype: lincRNA
Gene id: ENSG00000249378
Gene Name: LINC01060
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-195
0.035
1
RP1-29G21.1
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578040
Biotype: sense_intronic
Gene id: ENSG00000264598
Gene Name: RP1-29G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-76
0.028
6
6mer
160-178
0.007
4
LINC01162
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447262
Biotype: lincRNA
Gene id: ENSG00000232790
Gene Name: LINC01162
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-269
0.035
2
RP11-206L10.9
hsa-miR-205-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587530
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
943-959
0.035
2
RP11-488L18.8
hsa-miR-205-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428687
Biotype: lincRNA
Gene id: ENSG00000232347
Gene Name: RP11-488L18.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-540
0.027
1
6mer
370-395
0.007
1
XLOC_004989
hsa-miR-205-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010469
Biotype: transcript isomorph
Gene id: XLOC_004989
Gene Name: XLOC_004989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1552-1569
0.019
1
7mer
60-82
0.011
0
6mer
1644-1667
0.003
0
6mer
1307-1329
0.002
2
RP11-89H19.2
hsa-miR-205-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622535
Biotype: lincRNA
Gene id: ENSG00000278385
Gene Name: RP11-89H19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1022-1045
0.031
2
6mer
1384-1410
0.003
Not Conserved
SNHG1
hsa-miR-205-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544983
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
778-799
0.025
5
7mer
504-521
0.010
1
RP11-144L1.4
hsa-miR-205-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419738
Biotype: antisense
Gene id: ENSG00000236656
Gene Name: RP11-144L1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1014-1034
0.014
3
7mer
525-541
0.012
4
8mer
1495-1509
0.007
1
6mer
1577-1599
0.002
0
RP5-1007H16.1
hsa-miR-205-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609858
Biotype: lincRNA
Gene id: ENSG00000272745
Gene Name: RP5-1007H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-176
0.034
0
RP11-578B16.1
hsa-miR-205-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000615679
Biotype: sense_intronic
Gene id: ENSG00000277223
Gene Name: RP11-578B16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-181
0.031
8
6mer
121-139
0.003
1
XLOC_012275
hsa-miR-205-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025457
Biotype: transcript isomorph
Gene id: XLOC_012275
Gene Name: XLOC_012275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-338
0.033
2
6mer
5-27
0.001
Not Conserved
XLOC_001733
hsa-miR-205-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003923
Biotype: transcript isomorph
Gene id: XLOC_001733
Gene Name: XLOC_001733
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
60-82
0.034
0
RP11-335E6.2
hsa-miR-205-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455038
Biotype: lincRNA
Gene id: ENSG00000203605
Gene Name: RP11-335E6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-280
0.034
4
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