LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007463
hsa-miR-205-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016074
Biotype: transcript isomorph
Gene id: XLOC_007463
Gene Name: XLOC_007463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-238
0.035
1
HCG18
hsa-miR-205-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602861
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-119
0.035
0
LINC00504
hsa-miR-205-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505089
Biotype: lincRNA
Gene id: ENSG00000248360
Gene Name: LINC00504
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3965-3991
0.017
0
7mer
3721-3737
0.010
0
7mer
2434-2453
0.004
0
7mer
1552-1577
0.003
Not Conserved
6mer
2719-2739
0.001
0
LINC00964
hsa-miR-205-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504665
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-434
0.022
0
7mer
1993-2019
0.013
1
CTD-3220F14.2
hsa-miR-205-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592319
Biotype: sense_intronic
Gene id: ENSG00000267682
Gene Name: CTD-3220F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-139
0.031
3
6mer
21-34
0.004
0
RP1-101G11.3
hsa-miR-205-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
976-1000
0.024
1
8mer
6572-6598
0.004
1
6mer
527-549
0.003
0
6mer
2515-2533
0.002
2
7mer
2651-2678
0.002
1
6mer
1361-1387
0.001
1
6mer
1404-1425
0.000
1
HCG17
hsa-miR-205-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455957
Biotype: lincRNA
Gene id: ENSG00000270604
Gene Name: HCG17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-304
0.035
1
XLOC_005972
hsa-miR-205-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013326
Biotype: transcript isomorph
Gene id: XLOC_005972
Gene Name: XLOC_005972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-379
0.014
Not Conserved
6mer
12-28
0.010
3
6mer
2575-2591
0.005
1
6mer
968-994
0.002
1
6mer
2064-2080
0.002
0
6mer
992-1015
0.001
1
XLOC_013471
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028505
Biotype: transcript isomorph
Gene id: XLOC_013471
Gene Name: XLOC_013471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-442
0.031
4
6mer
20-42
0.004
2
CTA-292E10.9
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9142-9169
0.013
2
7mer
12582-12606
0.007
0
7mer
5011-5031
0.006
1
7mer
3105-3120
0.005
Not Conserved
6mer
14788-14808
0.001
2
6mer
23801-23826
0.001
1
6mer
8559-8584
0.001
1
6mer
5030-5051
0.001
0
RP11-314B1.2
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-201
0.021
3
8mer
3138-3155
0.013
0
8mer+wobble
1242-1263
0.002
1
XIST
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1012-1029
0.011
3
7mer
7396-7417
0.004
1
7mer
13304-13324
0.004
1
6mer
617-636
0.004
1
6mer
16643-16655
0.003
4
6mer
7995-8017
0.002
5
6mer
3197-3214
0.002
1
6mer
6027-6048
0.002
4
6mer
8923-8941
0.002
0
6mer
13214-13236
0.001
1
6mer
17890-17911
0.001
1
6mer
8841-8853
0.001
3
CTD-2135D7.5
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575424
Biotype: lincRNA
Gene id: ENSG00000262097
Gene Name: CTD-2135D7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
721-742
0.029
1
6mer
712-729
0.005
0
XLOC_004443
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010006
Biotype: transcript isomorph
Gene id: XLOC_004443
Gene Name: XLOC_004443
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-99
0.035
3
RP11-231E6.1
hsa-miR-205-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1342-1364
0.022
1
7mer
1137-1151
0.011
1
6mer
1035-1049
0.002
Not Conserved
RP11-673E11.2
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567082
Biotype: lincRNA
Gene id: ENSG00000261257
Gene Name: RP11-673E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1796-1822
0.011
1
7mer
31-56
0.010
1
8mer
1154-1179
0.010
1
6mer
1226-1245
0.004
4
RP4-773N10.4
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000554749
Biotype: antisense
Gene id: ENSG00000258634
Gene Name: RP4-773N10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1023-1041
0.024
5
7mer
554-573
0.004
0
8mer+wobble
3327-3344
0.003
1
6mer
723-750
0.002
3
6mer
3136-3151
0.002
5
6mer
1106-1132
0.001
1
AC011754.1
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415201
Biotype: sense_overlapping
Gene id: ENSG00000224879
Gene Name: AC011754.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-267
0.030
3
6mer
12-29
0.004
3
UNQ6494
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000617436
Biotype: lincRNA
Gene id: ENSG00000237372
Gene Name: UNQ6494
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-238
0.024
2
7mer
613-639
0.009
0
6mer
41-58
0.001
0
6mer
1122-1148
0.001
0
CTD-2562J17.4
hsa-miR-205-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529491
Biotype: lincRNA
Gene id: ENSG00000255136
Gene Name: CTD-2562J17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-287
0.035
1
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