LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-235G24.1
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437861
Biotype: lincRNA
Gene id: ENSG00000224371
Gene Name: RP11-235G24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-189
0.023
0
6mer
195-199
0.013
1
RP11-34F13.2
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502156
Biotype: lincRNA
Gene id: ENSG00000245719
Gene Name: RP11-34F13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1763-1781
0.031
3
6mer
50-75
0.004
3
RP11-631N16.2
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4304-4325
0.011
4
8mer
6082-6100
0.010
2
7mer
331-348
0.007
1
6mer
745-770
0.004
1
6mer
2486-2503
0.002
1
6mer
2632-2650
0.001
2
XLOC_004366
hsa-miR-205-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12734-12758
0.011
1
7mer
4769-4792
0.009
0
6mer
924-950
0.002
0
6mer
5366-5376
0.002
0
6mer
8936-8942
0.002
1
6mer
9856-9868
0.002
1
6mer
2815-2833
0.002
1
6mer
6460-6485
0.002
0
6mer
6072-6093
0.001
0
6mer
4235-4255
0.001
0
6mer
6108-6130
0.001
0
RP11-415G4.1
hsa-miR-205-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617598
Biotype: lincRNA
Gene id: ENSG00000274090
Gene Name: RP11-415G4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-676
0.019
1
7mer
463-486
0.013
1
6mer
182-198
0.004
1
CTD-2521M24.9
hsa-miR-205-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000500836
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1536-1548
0.036
0
RP11-244F12.3
hsa-miR-205-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560903
Biotype: antisense
Gene id: ENSG00000259498
Gene Name: RP11-244F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-117
0.033
1
6mer
1252-1270
0.002
1
AC003958.2
hsa-miR-205-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000432258
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3722-3746
0.028
1
6mer
199-219
0.003
1
6mer
842-865
0.002
0
6mer
1742-1765
0.001
0
6mer
3340-3357
0.001
0
RP11-23J9.4
hsa-miR-205-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529787
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4863-4873
0.007
2
7mer
5216-5242
0.007
2
6mer
5483-5500
0.006
8
6mer
5191-5217
0.004
1
6mer
5051-5076
0.003
1
7mer
4170-4183
0.002
1
6mer
2610-2634
0.002
1
6mer
4071-4093
0.002
0
6mer
861-882
0.001
3
6mer
3737-3758
0.001
5
6mer
2654-2679
0.001
1
6mer
2698-2718
0.000
2
6mer
2713-2727
0.000
2
XLOC_008823
hsa-miR-205-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017736
Biotype: transcript isomorph
Gene id: XLOC_008823
Gene Name: XLOC_008823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-230
0.030
2
6mer
820-843
0.003
2
6mer
854-879
0.003
1
XLOC_004153
hsa-miR-205-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008642
Biotype: transcript isomorph
Gene id: XLOC_004153
Gene Name: XLOC_004153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-83
0.035
1
AATK-AS1
hsa-miR-205-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414089
Biotype: antisense
Gene id: ENSG00000225180
Gene Name: AATK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1530-1550
0.022
0
8mer
347-368
0.013
0
SOX2-OT
hsa-miR-205-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461063
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
204-229
0.018
1
7mer
422-432
0.011
1
6mer
288-307
0.006
7
XLOC_000191
hsa-miR-205-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1127-1147
0.028
1
6mer
1364-1384
0.008
1
RP11-690D19.3
hsa-miR-205-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561652
Biotype: sense_overlapping
Gene id: ENSG00000260966
Gene Name: RP11-690D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1920-1947
0.022
1
7mer
615-627
0.008
1
6mer
2477-2491
0.003
5
7mer
1229-1247
0.003
2
LINC00293
hsa-miR-205-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2030-2038
0.035
1
NEAT1
hsa-miR-205-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19632-19659
0.005
0
6mer
22019-22033
0.004
5
7mer
4606-4629
0.004
1
6mer
22360-22386
0.004
3
8mer
3983-3998
0.003
0
6mer
118-138
0.003
2
6mer
2226-2251
0.002
4
6mer
314-338
0.002
1
6mer
6424-6435
0.002
2
6mer
2711-2734
0.001
0
6mer
4470-4489
0.001
1
6mer
13415-13440
0.001
0
6mer
22385-22409
0.001
0
7mer
19748-19770
0.001
1
6mer
13191-13210
0.001
1
6mer
19582-19609
0.001
1
RP11-173A16.1
hsa-miR-205-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591014
Biotype: antisense
Gene id: ENSG00000267560
Gene Name: RP11-173A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-47
0.021
1
7mer
321-335
0.011
1
6mer
562-581
0.004
0
XLOC_002859
hsa-miR-205-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005435
Biotype: transcript isomorph
Gene id: XLOC_002859
Gene Name: XLOC_002859
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-617
0.030
4
7mer
2113-2131
0.004
1
6mer
1879-1896
0.001
1
MIR205HG
hsa-miR-205-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429156
Biotype: lincRNA
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
816-840
0.035
1
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