LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
NR2F2-AS1
hsa-miR-205-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620029
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1193-1220
0.017
0
7mer
295-313
0.010
0
7mer
661-676
0.006
3
6mer
1096-1117
0.003
0
N4BP2L2-IT2
hsa-miR-205-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
741-760
0.031
1
6mer
137-149
0.004
1
6mer
1352-1371
0.001
1
RP11-956E11.1
hsa-miR-205-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549261
Biotype: lincRNA
Gene id: ENSG00000257507
Gene Name: RP11-956E11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-385
0.024
2
7mer
282-303
0.012
4
AC011525.2
hsa-miR-205-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562167
Biotype: lincRNA
Gene id: ENSG00000261400
Gene Name: AC011525.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5628-5650
0.024
0
6mer
5433-5453
0.003
1
7mer
1675-1701
0.003
Not Conserved
7mer
2920-2943
0.002
1
7mer
4199-4221
0.002
3
6mer
1972-1998
0.001
0
6mer
2904-2921
0.000
0
RP11-124K4.1
hsa-miR-205-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566218
Biotype: antisense
Gene id: ENSG00000260338
Gene Name: RP11-124K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-575
0.036
1
RP1-309H15.2
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000427775
Biotype: lincRNA
Gene id: ENSG00000228772
Gene Name: RP1-309H15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-629
0.032
0
6mer
451-467
0.004
2
XLOC_002702
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006093
Biotype: transcript isomorph
Gene id: XLOC_002702
Gene Name: XLOC_002702
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2492-2514
0.016
1
6mer
37-58
0.009
6
8mer
1967-1976
0.007
0
6mer
2291-2308
0.004
1
CTD-2533K21.4
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506032
Biotype: lincRNA
Gene id: ENSG00000251033
Gene Name: CTD-2533K21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-630
0.032
1
6mer
594-616
0.004
0
AC098973.1
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432163
Biotype: lincRNA
Gene id: ENSG00000229243
Gene Name: AC098973.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-338
0.019
2
7mer
2499-2526
0.014
1
6mer
2451-2474
0.003
1
RP11-58A18.1
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565822
Biotype: lincRNA
Gene id: ENSG00000261161
Gene Name: RP11-58A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-145
0.031
0
6mer
316-342
0.005
1
KB-1440D3.13
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610143
Biotype: sense_intronic
Gene id: ENSG00000272954
Gene Name: KB-1440D3.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
363-377
0.033
0
8mer+wobble
196-213
0.003
1
XLOC_008455
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018163
Biotype: transcript isomorph
Gene id: XLOC_008455
Gene Name: XLOC_008455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.030
0
6mer
235-256
0.006
0
GS1-358P8.4
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4717-4731
0.021
1
7mer
182-204
0.015
0
XLOC_006815
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014726
Biotype: transcript isomorph
Gene id: XLOC_006815
Gene Name: XLOC_006815
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-95
0.036
3
AC007365.1
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445738
Biotype: lincRNA
Gene id: ENSG00000233694
Gene Name: AC007365.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1070-1086
0.025
0
7mer
527-542
0.007
1
7mer
658-677
0.004
1
RP11-656D10.6
hsa-miR-205-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437060
Biotype: antisense
Gene id: ENSG00000238186
Gene Name: RP11-656D10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-197
0.026
3
7mer
319-345
0.009
1
MIR205HG
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433108
Biotype: retained_intron
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3166-3190
0.035
1
6mer
1362-1385
0.001
1
HNRNPU-AS1
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366527
Biotype: antisense
Gene id: ENSG00000188206
Gene Name: HNRNPU-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4744-4770
0.036
2
XLOC_005133
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011651
Biotype: transcript isomorph
Gene id: XLOC_005133
Gene Name: XLOC_005133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1039-1056
0.032
1
6mer
143-166
0.004
0
RP11-729M20.1
hsa-miR-205-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514327
Biotype: lincRNA
Gene id: ENSG00000251170
Gene Name: RP11-729M20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-436
0.036
1
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