LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
PLBD1-AS1
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542401
Biotype: antisense
Gene id: ENSG00000256751
Gene Name: PLBD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
451-469
0.036
2
RP11-56N19.5
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000376620
Biotype: antisense
Gene id: ENSG00000177553
Gene Name: RP11-56N19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1553-1574
0.034
0
6mer
1406-1432
0.003
2
RP11-362K2.2
hsa-miR-205-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548969
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-699
0.032
0
6mer
150-176
0.004
1
C1orf180
hsa-miR-205-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000370624
Biotype: lincRNA
Gene id: ENSG00000180869
Gene Name: C1orf180
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1297-1320
0.026
1
7mer
1042-1067
0.007
1
7mer
1027-1044
0.004
1
LINC01515
hsa-miR-205-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000596743
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-50
0.031
2
6mer
189-201
0.005
1
RNF144A-AS1
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424351
Biotype: retained_intron
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1289-1309
0.030
3
7mer
2387-2401
0.007
0
RP11-395G23.3
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521369
Biotype: lincRNA
Gene id: ENSG00000254615
Gene Name: RP11-395G23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-779
0.013
3
7mer
930-944
0.012
1
6mer
1223-1248
0.009
3
6mer
781-793
0.002
2
OIP5-AS1
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558457
Biotype: retained_intron
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
586-612
0.036
4
RP11-806O11.1
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520646
Biotype: lincRNA
Gene id: ENSG00000253671
Gene Name: RP11-806O11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-300
0.032
1
6mer
408-419
0.004
0
HAGLR
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000547207
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-334
0.029
2
6mer
377-398
0.007
5
LINC00115
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000473798
Biotype: lincRNA
Gene id: ENSG00000225880
Gene Name: LINC00115
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-91
0.031
1
7mer
518-536
0.005
Not Conserved
XLOC_012255
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025436
Biotype: transcript isomorph
Gene id: XLOC_012255
Gene Name: XLOC_012255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
362-381
0.036
2
LINC01252
hsa-miR-205-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499291
Biotype: lincRNA
Gene id: ENSG00000247157
Gene Name: LINC01252
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1298-1314
0.029
2
6mer
238-257
0.004
0
6mer
203-224
0.004
0
XLOC_010778
hsa-miR-205-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022446
Biotype: transcript isomorph
Gene id: XLOC_010778
Gene Name: XLOC_010778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
663-677
0.036
9
RP11-588H23.3
hsa-miR-205-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549359
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-459
0.033
0
6mer
107-127
0.003
Not Conserved
RP11-634B7.4
hsa-miR-205-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449298
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
869-888
0.019
0
7mer
1347-1366
0.014
0
6mer
915-935
0.002
0
XLOC_001199
hsa-miR-205-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-348
0.015
5
8mer
5146-5155
0.013
0
7mer
3910-3931
0.003
1
6mer
34-56
0.002
0
6mer
4962-4975
0.002
2
6mer
1891-1907
0.001
1
XLOC_001973
hsa-miR-205-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002742
Biotype: transcript isomorph
Gene id: XLOC_001973
Gene Name: XLOC_001973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2266-2290
0.028
1
8mer
1992-2011
0.008
1
XLOC_002054
hsa-miR-205-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004212
Biotype: transcript isomorph
Gene id: XLOC_002054
Gene Name: XLOC_002054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1787-1797
0.012
1
7mer
1507-1532
0.012
1
7mer
1214-1240
0.008
1
6mer
633-649
0.002
1
6mer
1866-1892
0.002
Not Conserved
XLOC_002012
hsa-miR-205-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004172
Biotype: transcript isomorph
Gene id: XLOC_002012
Gene Name: XLOC_002012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-559
0.020
1
7mer
799-826
0.012
1
6mer
820-843
0.004
2
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