LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-161D15.3
hsa-miR-205-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511291
Biotype: lincRNA
Gene id: ENSG00000251216
Gene Name: RP11-161D15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-64
0.034
0
6mer
199-220
0.003
1
RP11-441O15.3
hsa-miR-205-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
915-926
0.018
0
7mer
887-904
0.009
1
6mer
2892-2896
0.007
2
6mer
1108-1123
0.003
2
LINC00320
hsa-miR-205-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435279
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1673-1699
0.028
3
6mer
1596-1618
0.003
0
6mer
510-528
0.003
1
6mer
1377-1401
0.002
0
RP11-6N17.9
hsa-miR-205-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582262
Biotype: processed_transcript
Gene id: ENSG00000263798
Gene Name: RP11-6N17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-537
0.029
5
6mer
553-570
0.008
6
RP11-1C8.5
hsa-miR-205-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562917
Biotype: lincRNA
Gene id: ENSG00000261670
Gene Name: RP11-1C8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4347-4361
0.019
0
6mer
4454-4475
0.007
3
8mer
1440-1458
0.006
Not Conserved
6mer
751-767
0.004
4
6mer
3377-3392
0.001
0
LINC00963
hsa-miR-205-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000623185
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-472
0.037
1
LINC01330
hsa-miR-205-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493529
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-225
0.037
1
SOX21-AS1
hsa-miR-205-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000438290
Biotype: lincRNA
Gene id: ENSG00000227640
Gene Name: SOX21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2936-2961
0.031
4
6mer
2234-2254
0.002
0
6mer
125-149
0.002
4
6mer
1239-1258
0.002
2
XLOC_006900
hsa-miR-205-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014830
Biotype: transcript isomorph
Gene id: XLOC_006900
Gene Name: XLOC_006900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-395
0.037
3
AC013727.1
hsa-miR-205-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455716
Biotype: lincRNA
Gene id: ENSG00000232597
Gene Name: AC013727.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-418
0.037
5
TAB3-AS2
hsa-miR-205-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445240
Biotype: antisense
Gene id: ENSG00000235512
Gene Name: TAB3-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-277
0.022
9
7mer
82-100
0.015
6
RP11-849F2.4
hsa-miR-205-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585275
Biotype: lincRNA
Gene id: ENSG00000266279
Gene Name: RP11-849F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-35
0.031
1
6mer
166-190
0.006
1
XLOC_014355
hsa-miR-205-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029686
Biotype: transcript isomorph
Gene id: XLOC_014355
Gene Name: XLOC_014355
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-370
0.037
1
AC000120.7
hsa-miR-205-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414227
Biotype: sense_overlapping
Gene id: ENSG00000243107
Gene Name: AC000120.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1151-1172
0.032
1
6mer
1420-1442
0.005
1
AC005355.2
hsa-miR-205-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515627
Biotype: lincRNA
Gene id: ENSG00000251169
Gene Name: AC005355.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
572-593
0.022
1
7mer
103-127
0.010
1
6mer
966-992
0.005
0
RP11-494M8.4
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533634
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-364
0.037
3
RP11-1007O24.3
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565181
Biotype: lincRNA
Gene id: ENSG00000261423
Gene Name: RP11-1007O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-282
0.037
1
PCBP1-AS1
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458686
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-555
0.034
1
6mer
890-904
0.002
0
XLOC_012796
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026469
Biotype: transcript isomorph
Gene id: XLOC_012796
Gene Name: XLOC_012796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-236
0.034
1
6mer
595-619
0.002
1
RP11-354P11.2
hsa-miR-205-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577420
Biotype: antisense
Gene id: ENSG00000266120
Gene Name: RP11-354P11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-89
0.034
1
6mer
12-29
0.002
Not Conserved
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