LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
CTD-2184D3.5
hsa-miR-205-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558607
Biotype: antisense
Gene id: ENSG00000259712
Gene Name: CTD-2184D3.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
387-413
0.037
0
LINC00839
hsa-miR-205-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2191-2217
0.018
1
6mer
24-49
0.012
1
6mer
271-292
0.007
1
RP11-576I22.2
hsa-miR-205-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416416
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1813-1832
0.022
8
7mer
1321-1342
0.010
1
6mer
45-64
0.005
6
EMX2OS
hsa-miR-205-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-726
0.012
2
8mer
6591-6615
0.010
1
7mer
201-215
0.006
Not Conserved
7mer
3373-3393
0.003
0
6mer
6233-6251
0.002
3
6mer
2416-2432
0.001
3
6mer
1930-1950
0.001
1
6mer
3257-3278
0.001
1
6mer
1840-1859
0.001
1
AC012593.1
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585391
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-590
0.035
1
8mer+wobble
10-32
0.002
0
LINC00559
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569476
Biotype: lincRNA
Gene id: ENSG00000261446
Gene Name: LINC00559
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
999-1021
0.027
1
7mer
1266-1290
0.005
1
6mer
3705-3729
0.004
Not Conserved
6mer
956-980
0.001
1
RP11-613D13.5
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499066
Biotype: antisense
Gene id: ENSG00000246250
Gene Name: RP11-613D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
980-1002
0.029
1
6mer
87-112
0.005
1
6mer
2026-2047
0.004
1
RP11-461L18.1
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000561496
Biotype: lincRNA
Gene id: ENSG00000261382
Gene Name: RP11-461L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-519
0.037
3
XLOC_011740
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024424
Biotype: transcript isomorph
Gene id: XLOC_011740
Gene Name: XLOC_011740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5932-5951
0.012
1
7mer
508-525
0.012
1
7mer
2213-2240
0.003
0
6mer
6189-6216
0.003
0
8mer
2392-2411
0.002
0
6mer
3811-3835
0.002
2
6mer
661-686
0.002
0
6mer
2298-2323
0.001
0
AC008067.2
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430876
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
200-225
0.037
1
RP11-310I9.1
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506926
Biotype: antisense
Gene id: ENSG00000248601
Gene Name: RP11-310I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-287
0.024
1
7mer
46-71
0.013
1
RP11-863P13.2
hsa-miR-205-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568587
Biotype: lincRNA
Gene id: ENSG00000261816
Gene Name: RP11-863P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
189-210
0.037
0
RP11-196B3.3
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000621571
Biotype: antisense
Gene id: ENSG00000275186
Gene Name: RP11-196B3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-174
0.034
1
6mer
525-543
0.003
0
RP11-290F24.6
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000600308
Biotype: lincRNA
Gene id: ENSG00000267940
Gene Name: RP11-290F24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1027-1052
0.020
3
7mer
267-290
0.013
1
6mer
189-201
0.004
3
AL162759.1
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000418927
Biotype: lincRNA
Gene id: ENSG00000235269
Gene Name: AL162759.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-271
0.029
1
7mer
385-397
0.008
1
XLOC_009680
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020349
Biotype: transcript isomorph
Gene id: XLOC_009680
Gene Name: XLOC_009680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2357-2379
0.030
1
6mer
197-223
0.003
1
6mer
1532-1556
0.002
1
6mer
1161-1174
0.002
1
GS1-5L10.1
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522980
Biotype: antisense
Gene id: ENSG00000253576
Gene Name: GS1-5L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-50
0.037
12
LINC00559
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047489.1
Biotype: lincRNA
Gene id: NR_047489.1 (gene)
Gene Name: LINC00559
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
999-1021
0.027
1
7mer
1266-1290
0.005
1
6mer
3705-3729
0.004
Not Conserved
6mer
956-980
0.001
1
CTD-2201E9.1
hsa-miR-205-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510879
Biotype: lincRNA
Gene id: ENSG00000251370
Gene Name: CTD-2201E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-156
0.030
2
6mer
145-166
0.004
1
6mer
891-902
0.003
1
RP11-588H23.3
hsa-miR-205-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549616
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-459
0.034
0
6mer
107-127
0.003
Not Conserved
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